Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   KQ253_RS13855 Genome accession   NZ_CP076812
Coordinates   2839695..2840177 (-) Length   160 a.a.
NCBI ID   WP_001046422.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC23022     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2834695..2845177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ253_RS13820 (KQ253_13740) - 2834802..2835836 (+) 1035 WP_001189451.1 lipase secretion chaperone -
  KQ253_RS13825 (KQ253_13745) - 2835951..2836892 (+) 942 WP_085943440.1 triacylglycerol lipase -
  KQ253_RS13830 (KQ253_13750) rplS 2836945..2837313 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  KQ253_RS13835 (KQ253_13755) trmD 2837521..2838261 (-) 741 WP_000464596.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  KQ253_RS13840 (KQ253_13760) rimM 2838307..2838855 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  KQ253_RS13845 (KQ253_13765) rpsP 2838875..2839126 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  KQ253_RS13850 (KQ253_13770) pilE 2839273..2839698 (-) 426 WP_000788343.1 type IV pilin protein Machinery gene
  KQ253_RS13855 (KQ253_13775) pilY2 2839695..2840177 (-) 483 WP_001046422.1 type IV pilin protein Machinery gene
  KQ253_RS13860 (KQ253_13780) pilY1 2840190..2844044 (-) 3855 WP_000768952.1 PilC/PilY family type IV pilus protein Machinery gene
  KQ253_RS13865 (KQ253_13785) pilX 2844056..2844874 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17474.77 Da        Isoelectric Point: 9.1833

>NTDB_id=578126 KQ253_RS13855 WP_001046422.1 2839695..2840177(-) (pilY2) [Acinetobacter baumannii strain UC23022]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAGQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETKSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=578126 KQ253_RS13855 WP_001046422.1 2839695..2840177(-) (pilY2) [Acinetobacter baumannii strain UC23022]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGGACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAAGAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

96.875

100

0.969
  comE Acinetobacter baylyi ADP1

40.116

100

0.431