Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KQ253_RS00375 Genome accession   NZ_CP076812
Coordinates   70373..70474 (+) Length   33 a.a.
NCBI ID   WP_168713084.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC23022     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 65373..75474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ253_RS00360 - 67520..67636 (+) 117 WP_001992235.1 single-stranded DNA-binding protein -
  KQ253_RS00365 (KQ253_00365) - 67937..68905 (-) 969 WP_012308653.1 IS30 family transposase -
  KQ253_RS00370 (KQ253_00370) - 69018..70391 (+) 1374 Protein_73 hypothetical protein -
  KQ253_RS00375 (KQ253_00375) ssb 70373..70474 (+) 102 WP_168713084.1 single-stranded DNA-binding protein Machinery gene
  KQ253_RS00380 (KQ253_00380) - 70904..71950 (+) 1047 WP_000027064.1 nucleoid-associated protein -
  KQ253_RS00385 (KQ253_00385) - 71953..72969 (+) 1017 WP_366124734.1 hypothetical protein -
  KQ253_RS00390 (KQ253_00390) - 73064..74032 (+) 969 WP_012308653.1 IS30 family transposase -
  KQ253_RS00395 (KQ253_00395) - 74051..74248 (+) 198 WP_223238528.1 hypothetical protein -

Sequence

Protein


Download         Length: 33 a.a.        Molecular weight: 3621.22 Da        Isoelectric Point: 9.7265

>NTDB_id=578111 KQ253_RS00375 WP_168713084.1 70373..70474(+) (ssb) [Acinetobacter baumannii strain UC23022]
MVSSQLAEISSKYLKKGGKVYVEGSLCTGKWKD

Nucleotide


Download         Length: 102 bp        

>NTDB_id=578111 KQ253_RS00375 WP_168713084.1 70373..70474(+) (ssb) [Acinetobacter baumannii strain UC23022]
TTGGTTAGTTCCCAATTAGCCGAGATTTCCAGTAAGTACCTTAAGAAAGGTGGCAAGGTTTATGTTGAGGGTTCATTGTG
TACTGGGAAGTGGAAAGACTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

62.963

81.818

0.515
  ssb Vibrio cholerae strain A1552

55.172

87.879

0.485
  ssb Neisseria gonorrhoeae MS11

53.571

84.848

0.455
  ssb Neisseria meningitidis MC58

53.571

84.848

0.455