Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   KQ254_RS04280 Genome accession   NZ_CP076807
Coordinates   903620..904360 (+) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain UC20804     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 898620..909360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ254_RS04265 (KQ254_04245) ponA 899207..901762 (-) 2556 WP_212294745.1 penicillin-binding protein PBP1a -
  KQ254_RS04270 (KQ254_04250) pilM 901924..902982 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  KQ254_RS04275 (KQ254_04255) pilN 902982..903623 (+) 642 WP_109090675.1 PilN domain-containing protein Machinery gene
  KQ254_RS04280 (KQ254_04260) pilO 903620..904360 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  KQ254_RS04285 (KQ254_04265) pilP 904371..904898 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  KQ254_RS04290 (KQ254_04270) pilQ 904961..907126 (+) 2166 WP_114289227.1 type IV pilus secretin PilQ Machinery gene
  KQ254_RS04295 (KQ254_04275) aroK 907138..907707 (+) 570 WP_000643712.1 shikimate kinase AroK -
  KQ254_RS04300 (KQ254_04280) aroB 907736..908818 (+) 1083 WP_001194249.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=578091 KQ254_RS04280 WP_000076101.1 903620..904360(+) (pilO) [Acinetobacter baumannii strain UC20804]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=578091 KQ254_RS04280 WP_000076101.1 903620..904360(+) (pilO) [Acinetobacter baumannii strain UC20804]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCAAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAAAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683