Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   KQ254_RS04275 Genome accession   NZ_CP076807
Coordinates   902982..903623 (+) Length   213 a.a.
NCBI ID   WP_109090675.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC20804     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 897982..908623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ254_RS04255 (KQ254_04235) - 898030..898362 (+) 333 WP_000169599.1 hypothetical protein -
  KQ254_RS04260 (KQ254_04240) - 898365..899189 (+) 825 WP_212294743.1 putative RNA methyltransferase -
  KQ254_RS04265 (KQ254_04245) ponA 899207..901762 (-) 2556 WP_212294745.1 penicillin-binding protein PBP1a -
  KQ254_RS04270 (KQ254_04250) pilM 901924..902982 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  KQ254_RS04275 (KQ254_04255) pilN 902982..903623 (+) 642 WP_109090675.1 PilN domain-containing protein Machinery gene
  KQ254_RS04280 (KQ254_04260) pilO 903620..904360 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  KQ254_RS04285 (KQ254_04265) pilP 904371..904898 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  KQ254_RS04290 (KQ254_04270) pilQ 904961..907126 (+) 2166 WP_114289227.1 type IV pilus secretin PilQ Machinery gene
  KQ254_RS04295 (KQ254_04275) aroK 907138..907707 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24018.37 Da        Isoelectric Point: 5.8601

>NTDB_id=578090 KQ254_RS04275 WP_109090675.1 902982..903623(+) (pilN) [Acinetobacter baumannii strain UC20804]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRNA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=578090 KQ254_RS04275 WP_109090675.1 902982..903623(+) (pilN) [Acinetobacter baumannii strain UC20804]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTAATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCCGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

72.381

98.592

0.714