Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   L6J92_RS21375 Genome accession   NZ_CP094676
Coordinates   5077396..5078436 (-) Length   346 a.a.
NCBI ID   WP_243781869.1    Uniprot ID   -
Organism   Streptomyces sp. CB09030     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 5072396..5083436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6J92_RS21355 (L6J92_21355) - 5072702..5073691 (-) 990 WP_243781866.1 DUF5605 domain-containing protein -
  L6J92_RS21360 (L6J92_21360) - 5073688..5075109 (-) 1422 WP_243781867.1 DUF5060 domain-containing protein -
  L6J92_RS21365 (L6J92_21365) - 5075106..5076326 (-) 1221 WP_243781868.1 sialidase family protein -
  L6J92_RS21370 (L6J92_21370) - 5076323..5077399 (-) 1077 WP_224298447.1 oligopeptide/dipeptide ABC transporter ATP-binding protein -
  L6J92_RS21375 (L6J92_21375) amiE 5077396..5078436 (-) 1041 WP_243781869.1 ABC transporter ATP-binding protein Regulator
  L6J92_RS21380 (L6J92_21380) - 5078445..5079632 (-) 1188 WP_243781870.1 ABC transporter permease -
  L6J92_RS21385 (L6J92_21385) - 5079640..5080641 (-) 1002 WP_194278836.1 ABC transporter permease -
  L6J92_RS21390 (L6J92_21390) - 5080663..5082669 (-) 2007 WP_243781871.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37543.38 Da        Isoelectric Point: 8.0086

>NTDB_id=578092 L6J92_RS21375 WP_243781869.1 5077396..5078436(-) (amiE) [Streptomyces sp. CB09030]
MGASATEQSRPLPARETVLEVEGLHTRFELDDGVVHAVNGVDLAIGRGEVLAVVGESGCGKSVMARSVLRLVDRPGRITA
GHIRVRTDDGTADMVTADPRTVRSVRGNRVAMVFQEPMSSMSPMHTLGNQIGEAIRLHEPVTKAEARRRTVELLGRVGIP
APARRVDEYPFQMSGGMLQRVMIAMALACGPQLLIADEPTTALDVTTQAQILDLLRSLQQETGMAVMLITHDLGVAARMA
DRVAVMYLGTVVEEGPLDDVFRAPRHPYTKALLRSVPRLGSGSRERLKPVRGMVPHAYRRPAGCPFHPRCDAFMPGRCDV
TRPAPVRAADRPGAVSCLLYEEEDPA

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=578092 L6J92_RS21375 WP_243781869.1 5077396..5078436(-) (amiE) [Streptomyces sp. CB09030]
ATGGGTGCGTCGGCAACGGAACAGTCCCGGCCGCTACCGGCCCGGGAGACGGTCCTGGAGGTCGAAGGGCTGCACACCCG
CTTCGAACTCGACGACGGGGTGGTGCACGCGGTCAACGGCGTCGACCTCGCCATCGGCCGGGGCGAGGTCCTCGCCGTCG
TCGGCGAGTCGGGCTGCGGCAAGAGCGTCATGGCCCGCTCCGTCCTGCGTCTGGTCGACCGGCCCGGCCGGATCACCGCC
GGACACATCCGGGTACGGACCGACGACGGCACGGCCGACATGGTCACCGCCGACCCGCGCACCGTGCGGTCCGTGCGCGG
CAACCGCGTCGCCATGGTCTTCCAGGAACCGATGTCGTCGATGAGCCCCATGCACACCCTGGGCAACCAGATCGGCGAGG
CGATCCGCCTGCACGAACCCGTCACCAAGGCCGAGGCCCGCAGACGCACCGTGGAACTCCTGGGCCGCGTCGGCATCCCG
GCCCCCGCCCGGCGCGTCGACGAGTACCCCTTCCAGATGAGCGGCGGCATGCTGCAGCGCGTCATGATCGCCATGGCGCT
CGCCTGCGGACCGCAGCTGCTCATCGCCGACGAACCGACCACCGCCCTGGACGTCACCACCCAGGCCCAGATCCTCGACC
TGCTGCGCTCCCTCCAGCAGGAGACCGGCATGGCGGTCATGCTCATCACCCACGACCTCGGCGTGGCCGCCCGGATGGCC
GACCGGGTCGCCGTGATGTACCTCGGGACGGTCGTCGAGGAGGGACCGCTGGACGACGTGTTCCGGGCGCCGCGCCACCC
GTACACCAAGGCACTGCTGCGGTCCGTGCCCCGGCTGGGCTCGGGGTCGCGCGAGCGGCTCAAACCCGTGCGCGGCATGG
TGCCCCACGCCTACCGGCGGCCCGCCGGCTGCCCCTTCCACCCGCGCTGCGACGCGTTCATGCCCGGCCGTTGCGACGTC
ACACGCCCCGCCCCGGTCCGGGCCGCGGACCGCCCGGGCGCGGTGAGCTGCCTGCTGTACGAGGAGGAGGACCCCGCATG
A

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(39-200)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(252-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

43.373

95.954

0.416
  amiE Streptococcus thermophilus LMD-9

43.373

95.954

0.416
  amiE Streptococcus salivarius strain HSISS4

43.373

95.954

0.416
  oppD Streptococcus mutans UA159

42.813

94.509

0.405