Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   KQ254_RS04285 Genome accession   NZ_CP076807
Coordinates   904371..904898 (+) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain UC20804     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 899371..909898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ254_RS04270 (KQ254_04250) pilM 901924..902982 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  KQ254_RS04275 (KQ254_04255) pilN 902982..903623 (+) 642 WP_109090675.1 PilN domain-containing protein Machinery gene
  KQ254_RS04280 (KQ254_04260) pilO 903620..904360 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  KQ254_RS04285 (KQ254_04265) pilP 904371..904898 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  KQ254_RS04290 (KQ254_04270) pilQ 904961..907126 (+) 2166 WP_114289227.1 type IV pilus secretin PilQ Machinery gene
  KQ254_RS04295 (KQ254_04275) aroK 907138..907707 (+) 570 WP_000643712.1 shikimate kinase AroK -
  KQ254_RS04300 (KQ254_04280) aroB 907736..908818 (+) 1083 WP_001194249.1 3-dehydroquinate synthase -
  KQ254_RS04305 (KQ254_04285) - 908834..909709 (+) 876 WP_000218807.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=578092 KQ254_RS04285 WP_000695065.1 904371..904898(+) (pilP) [Acinetobacter baumannii strain UC20804]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=578092 KQ254_RS04285 WP_000695065.1 904371..904898(+) (pilP) [Acinetobacter baumannii strain UC20804]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCGCAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCTCTTGAAGCTTTAAATATGAAAGGGAGCATGCG
AAATAATCGAGGGCAGATATTGGCCTTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714