Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   MTO79_RS12390 Genome accession   NZ_CP094474
Coordinates   2423108..2423539 (-) Length   143 a.a.
NCBI ID   WP_080585155.1    Uniprot ID   -
Organism   Lactococcus lactis strain SCB469     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2418108..2428539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTO79_RS12355 (MTO79_12355) - 2418755..2419492 (-) 738 WP_058221575.1 metal ABC transporter ATP-binding protein -
  MTO79_RS12360 (MTO79_12360) - 2419669..2420511 (-) 843 WP_003129990.1 metal ABC transporter substrate-binding protein -
  MTO79_RS12365 (MTO79_12365) - 2420508..2420945 (-) 438 WP_003129992.1 zinc-dependent MarR family transcriptional regulator -
  MTO79_RS12370 (MTO79_12370) - 2421152..2422099 (+) 948 WP_003130410.1 IS30 family transposase -
  MTO79_RS12375 (MTO79_12375) comGG 2422073..2422399 (-) 327 WP_058221568.1 competence type IV pilus minor pilin ComGG Machinery gene
  MTO79_RS12380 (MTO79_12380) comGF 2422449..2422877 (-) 429 Protein_2393 competence type IV pilus minor pilin ComGF -
  MTO79_RS12385 (MTO79_12385) comGE 2422840..2423136 (-) 297 WP_010906316.1 competence type IV pilus minor pilin ComGE Machinery gene
  MTO79_RS12390 (MTO79_12390) comGD 2423108..2423539 (-) 432 WP_080585155.1 competence type IV pilus minor pilin ComGD Machinery gene
  MTO79_RS12395 (MTO79_12395) comGC 2423499..2423768 (-) 270 WP_003129998.1 competence type IV pilus major pilin ComGC Machinery gene
  MTO79_RS12400 (MTO79_12400) - 2423895..2424587 (-) 693 WP_152994386.1 hypothetical protein -
  MTO79_RS12405 (MTO79_12405) - 2424829..2425608 (-) 780 WP_082225220.1 peptidoglycan amidohydrolase family protein -
  MTO79_RS12410 (MTO79_12410) - 2425608..2425907 (-) 300 WP_031559226.1 phage holin -
  MTO79_RS12415 (MTO79_12415) - 2425920..2426270 (-) 351 WP_014570798.1 hypothetical protein -
  MTO79_RS12420 (MTO79_12420) - 2426283..2426519 (-) 237 WP_082225257.1 hypothetical protein -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16534.53 Da        Isoelectric Point: 9.6891

>NTDB_id=577954 MTO79_RS12390 WP_080585155.1 2423108..2423539(-) (comGD) [Lactococcus lactis strain SCB469]
MIRTKMKNEILMTRAFTLLESLLVLLIISFITTLFSLEIIQTVHLFKGELFVLQFENFYKRSQEDAALLQKSESLVAKNQ
ELICEDRSITIPKEVAVKDFTVKFDDKGGNSSLQKLTIFLPYEKKFITYQLEIGSGKFKKKIS

Nucleotide


Download         Length: 432 bp        

>NTDB_id=577954 MTO79_RS12390 WP_080585155.1 2423108..2423539(-) (comGD) [Lactococcus lactis strain SCB469]
ATGATCAGAACAAAAATGAAGAACGAAATTTTAATGACTAGAGCATTTACTTTACTAGAGTCTCTTCTAGTTTTGTTGAT
TATTTCTTTTATCACAACTCTTTTTTCTTTAGAAATAATACAAACAGTCCATCTTTTTAAGGGAGAACTGTTTGTTCTCC
AGTTTGAAAATTTCTATAAAAGGAGTCAAGAAGATGCTGCACTGCTTCAAAAATCTGAAAGTTTAGTTGCTAAAAATCAA
GAATTAATCTGTGAAGATAGAAGTATCACAATTCCAAAGGAGGTAGCAGTTAAAGATTTTACAGTTAAATTTGATGATAA
GGGAGGGAATTCTAGCTTACAAAAACTCACAATTTTTTTACCTTACGAAAAAAAGTTCATCACTTATCAATTGGAGATAG
GCAGTGGAAAATTTAAAAAGAAAATCAGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

66.434

100

0.664
  comGD Streptococcus gordonii str. Challis substr. CH1

39.716

98.601

0.392
  comGD Streptococcus mutans UA140

40.625

89.51

0.364
  comGD Streptococcus mutans UA159

40.625

89.51

0.364