Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KQY33_RS01555 Genome accession   NZ_CP076733
Coordinates   318287..318835 (+) Length   182 a.a.
NCBI ID   WP_044174221.1    Uniprot ID   A0A1Q9H2L1
Organism   Photobacterium damselae strain Pdd2008     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 313287..323835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQY33_RS01545 (KQY33_01550) - 313291..315042 (-) 1752 WP_284633934.1 PglL family O-oligosaccharyltransferase -
  KQY33_RS01550 (KQY33_01555) uvrA 315195..318020 (-) 2826 WP_238056157.1 excinuclease ABC subunit UvrA -
  KQY33_RS01555 (KQY33_01560) ssb 318287..318835 (+) 549 WP_044174221.1 single-stranded DNA-binding protein Machinery gene
  KQY33_RS01560 (KQY33_01565) csrD 318986..320926 (+) 1941 WP_284633935.1 RNase E specificity factor CsrD -
  KQY33_RS01565 (KQY33_01570) - 321142..322542 (+) 1401 WP_284633936.1 PilN domain-containing protein -
  KQY33_RS01570 (KQY33_01575) pilO 322539..323174 (+) 636 WP_068945507.1 type 4a pilus biogenesis protein PilO -
  KQY33_RS01575 (KQY33_01580) - 323167..323490 (+) 324 WP_065170863.1 hypothetical protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20101.25 Da        Isoelectric Point: 4.9059

>NTDB_id=577802 KQY33_RS01555 WP_044174221.1 318287..318835(+) (ssb) [Photobacterium damselae strain Pdd2008]
MASRGVNKVILVGNLGNDPEVRYMPNGGAVANITIATSETWRDKATGENREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEIVVQGFNGVMQMLGGRQNQGGQGMGAPMGGQQQQGGWGQPQQPAAQNFAPQQQQQQAPA
QQPAPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=577802 KQY33_RS01555 WP_044174221.1 318287..318835(+) (ssb) [Photobacterium damselae strain Pdd2008]
ATGGCCAGTCGTGGCGTAAACAAAGTTATCCTAGTGGGTAACCTAGGAAATGATCCTGAAGTTCGTTACATGCCAAATGG
CGGTGCGGTTGCAAACATTACCATTGCAACTTCAGAAACTTGGCGTGATAAAGCAACCGGCGAAAATCGTGAAAAAACTG
AATGGCACCGTGTGGTTCTATTTGGCAAATTAGCTGAAGTTGCTGGTGAATACCTACGTAAAGGTTCTCAAGTATACATT
GAGGGTCAGCTACAAACTCGTAAGTGGCAGAACCAACAGGGCCAAGATCAGTACACTACAGAAATCGTAGTACAAGGCTT
TAACGGCGTTATGCAAATGTTGGGTGGCCGTCAAAACCAAGGTGGTCAAGGTATGGGCGCTCCTATGGGCGGTCAACAGC
AGCAAGGCGGTTGGGGTCAACCACAACAGCCTGCAGCACAAAACTTTGCTCCACAACAACAGCAGCAACAAGCTCCAGCT
CAACAACCTGCACCTCAGCAGCAGTACAATGAGCCACCAATGGACTTCGACGACGATATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Q9H2L1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

77.473

100

0.775
  ssb Glaesserella parasuis strain SC1401

57.527

100

0.588
  ssb Neisseria meningitidis MC58

46.739

100

0.473
  ssb Neisseria gonorrhoeae MS11

46.739

100

0.473