Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   CCX78_RS05415 Genome accession   NZ_AP017931
Coordinates   1061622..1062296 (-) Length   224 a.a.
NCBI ID   WP_096585049.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain LK-145     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1056622..1067296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX78_RS05390 (LASAK_01075) minD 1057421..1058215 (-) 795 WP_016265029.1 septum site-determining protein MinD -
  CCX78_RS05395 (LASAK_01076) - 1058217..1058888 (-) 672 WP_011374559.1 septum site-determining protein MinC -
  CCX78_RS05400 (LASAK_01077) mreD 1058905..1059435 (-) 531 WP_172425586.1 rod shape-determining protein MreD -
  CCX78_RS05405 (LASAK_01078) mreC 1059437..1060297 (-) 861 WP_011374557.1 rod shape-determining protein MreC -
  CCX78_RS05410 (LASAK_01079) - 1060439..1061458 (-) 1020 WP_035146965.1 rod shape-determining protein -
  CCX78_RS05415 (LASAK_01080) ysxA/radC 1061622..1062296 (-) 675 WP_096585049.1 RadC family protein Machinery gene
  CCX78_RS05420 (LASAK_01081) - 1062370..1063020 (-) 651 WP_016265026.1 HAD family hydrolase -
  CCX78_RS05425 (LASAK_01082) - 1063021..1064325 (-) 1305 WP_096585052.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  CCX78_RS05430 (LASAK_01083) - 1064447..1067095 (-) 2649 WP_096585055.1 valine--tRNA ligase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25055.82 Da        Isoelectric Point: 6.9595

>NTDB_id=57760 CCX78_RS05415 WP_096585049.1 1061622..1062296(-) (ysxA/radC) [Latilactobacillus sakei strain LK-145]
MLTSQSKLQPREQAALYGAASLSDEQLATVILRSGTQHLPVEVVAQRLLQRYPDFQDLEQADLVQLRQIEGIGPVKAIEL
QAICELSRRIQNQRTLRFGVVASSQMVGQRMIESLAGETQEQLLAVYLDVKNQIIQIKQLYLGTLNSSVAHPREVFKWAV
QYSAAKFILVHNHPSGQLAPSTQDINFTKRIVNCGQLMGITCLDHLIIGSSQYLSLREEGYLVD

Nucleotide


Download         Length: 675 bp        

>NTDB_id=57760 CCX78_RS05415 WP_096585049.1 1061622..1062296(-) (ysxA/radC) [Latilactobacillus sakei strain LK-145]
ATGTTAACGAGTCAATCAAAGTTACAACCCAGAGAGCAAGCCGCACTGTATGGTGCGGCCAGTCTAAGTGATGAACAATT
AGCAACCGTAATTTTACGTTCAGGCACCCAACATTTACCCGTTGAAGTCGTTGCACAACGATTATTGCAACGGTACCCCG
ACTTTCAAGATCTTGAGCAAGCGGACTTAGTACAATTACGTCAAATCGAAGGTATTGGACCGGTTAAAGCGATTGAACTC
CAAGCGATTTGTGAGTTAAGTCGGCGCATTCAAAATCAGCGGACATTACGTTTTGGTGTAGTGGCTTCTAGTCAGATGGT
AGGCCAACGAATGATTGAATCCTTAGCGGGAGAGACACAAGAACAGCTATTAGCGGTCTATTTAGATGTTAAAAATCAGA
TTATTCAGATTAAGCAACTCTATCTGGGCACACTTAATAGTTCTGTTGCACATCCGCGGGAAGTCTTCAAATGGGCGGTT
CAGTATTCAGCGGCTAAGTTTATCTTGGTCCATAATCACCCGAGCGGTCAATTGGCACCATCAACGCAAGATATTAACTT
TACAAAAAGAATTGTTAATTGCGGACAGTTGATGGGGATTACTTGTTTGGATCATTTAATCATTGGTAGCTCACAGTACT
TAAGCCTACGTGAAGAAGGGTATCTAGTCGATTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(7-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

43.056

96.429

0.415
  radC Streptococcus pneumoniae TIGR4

41.553

97.768

0.406
  radC Streptococcus pneumoniae R6

41.096

97.768

0.402
  radC Streptococcus pneumoniae D39

41.096

97.768

0.402
  radC Streptococcus gordonii str. Challis substr. CH1

38.356

97.768

0.375

Multiple sequence alignment