Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MQV61_RS23095 Genome accession   NZ_CP094339
Coordinates   4706678..4707214 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain W224N     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4701678..4712214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQV61_RS23075 soxR 4703407..4703871 (-) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -
  MQV61_RS23080 soxS 4703957..4704280 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  MQV61_RS23085 pdeC 4704283..4705869 (-) 1587 WP_001314348.1 c-di-GMP phosphodiesterase PdeC -
  MQV61_RS23090 yjcB 4706298..4706579 (+) 282 WP_001296643.1 YjcB family protein -
  MQV61_RS23095 ssb 4706678..4707214 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  MQV61_RS23100 uvrA 4707468..4710290 (+) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  MQV61_RS23105 yjbR 4710325..4710681 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  MQV61_RS23110 yjbQ 4710685..4711101 (-) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  MQV61_RS23115 aphA 4711212..4711925 (-) 714 WP_001226933.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=577471 MQV61_RS23095 WP_000168305.1 4706678..4707214(-) (ssb) [Escherichia coli strain W224N]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=577471 MQV61_RS23095 WP_000168305.1 4706678..4707214(-) (ssb) [Escherichia coli strain W224N]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489