Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KQ248_RS09005 Genome accession   NZ_CP076683
Coordinates   1965576..1966916 (-) Length   446 a.a.
NCBI ID   WP_128120176.1    Uniprot ID   A0A365PW73
Organism   Stutzerimonas zhaodongensis strain A252     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1960576..1971916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ248_RS23350 (KQ248_08990) - 1960638..1962602 (-) 1965 WP_128120143.1 methyl-accepting chemotaxis protein -
  KQ248_RS08995 (KQ248_08995) - 1962650..1964263 (-) 1614 WP_216707182.1 response regulator -
  KQ248_RS09000 (KQ248_09000) - 1964481..1965536 (+) 1056 WP_128120142.1 DUF2333 family protein -
  KQ248_RS09005 (KQ248_09005) pilR 1965576..1966916 (-) 1341 WP_128120176.1 sigma-54-dependent transcriptional regulator Regulator
  KQ248_RS09010 (KQ248_09010) pilS 1967024..1968616 (-) 1593 WP_128120141.1 sensor histidine kinase Regulator
  KQ248_RS09015 (KQ248_09015) - 1968606..1968842 (-) 237 WP_128120140.1 PP0621 family protein -
  KQ248_RS09020 (KQ248_09020) - 1968903..1969910 (-) 1008 WP_128120139.1 outer membrane protein assembly factor BamD -
  KQ248_RS09025 (KQ248_09025) rluD 1970200..1971174 (+) 975 WP_128120138.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KQ248_RS09030 (KQ248_09030) pgeF 1971171..1971905 (+) 735 WP_128120137.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49885.56 Da        Isoelectric Point: 6.7508

>NTDB_id=577271 KQ248_RS09005 WP_128120176.1 1965576..1966916(-) (pilR) [Stutzerimonas zhaodongensis strain A252]
MTVRQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEAKECLAREHYDLCLTDMRLPDGCGLELVQFIQQQYPQLPVA
MITAYGSLDTAIGALKAGAFDFLTKPVDLGRLRELVNTALRLRTPNPNELTVDSRLLGASPPMNVLRKQIGKLARSQAPV
YISGESGSGKELVARLIHEQGPRHERPFVPVNCGAIPSELMESEFFGHKKGSFTGAMEDKPGLFQAANGGTLFLDEVADL
PLPMQVKLLRAIQEKAVRSVGGAKEVVVDVRILCATHKDLASEVAAGRFRQDLYYRLNVIELRVPPLRERREDIAQLAEV
MLRRLAQECGDTPARLQPDALAKLQSYRFPGNVRELENMLARAYTLCEGEEIKPSDLRLSDAPGMPENGEASLAQIDNLE
DHLEEVERKLIMQALEETRWNRTAAAQRLGLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=577271 KQ248_RS09005 WP_128120176.1 1965576..1966916(-) (pilR) [Stutzerimonas zhaodongensis strain A252]
ATGACCGTTCGCCAGAAAGCACTGATCATCGATGACGAACCCGATATCCGTGAGCTCCTGGAGATCACCCTCGGACGCAT
GAAGCTGGACACCCGCAGCGCCCGCAACCTCAAGGAAGCCAAGGAGTGCCTGGCGCGCGAGCACTACGATCTGTGCTTGA
CCGATATGCGGCTGCCTGACGGATGCGGTTTGGAGCTGGTGCAGTTCATTCAGCAGCAGTACCCACAATTGCCGGTCGCG
ATGATCACCGCCTATGGCAGTCTGGACACGGCCATTGGGGCGCTCAAGGCCGGGGCCTTCGACTTTCTCACCAAACCGGT
GGATCTCGGTCGGCTGCGCGAACTGGTCAATACCGCGCTGCGGCTGCGCACGCCGAACCCAAACGAACTTACAGTCGACA
GCCGCTTACTCGGCGCCTCGCCGCCGATGAATGTGCTGCGCAAACAGATCGGGAAACTGGCGCGCAGCCAGGCACCGGTG
TACATCAGTGGCGAATCCGGCAGTGGCAAGGAATTGGTCGCGCGGCTGATCCACGAGCAAGGGCCCCGTCACGAGCGGCC
ATTCGTTCCGGTCAACTGCGGGGCGATTCCCTCGGAGCTGATGGAAAGCGAATTCTTCGGGCATAAGAAGGGCAGCTTTA
CCGGGGCGATGGAAGACAAGCCCGGGCTGTTCCAGGCGGCCAATGGCGGCACGCTGTTTCTCGACGAAGTAGCCGATTTG
CCTCTGCCGATGCAAGTGAAACTGCTGCGGGCGATCCAGGAAAAGGCCGTGCGCTCCGTTGGCGGCGCCAAGGAAGTCGT
GGTCGATGTGCGGATTCTTTGCGCCACCCACAAGGACCTGGCAAGCGAAGTCGCCGCGGGACGCTTTCGGCAGGACCTCT
ACTACCGGCTGAACGTCATCGAGTTACGCGTGCCGCCCCTGCGCGAGCGCCGCGAGGATATTGCCCAGCTGGCTGAGGTG
ATGCTTCGGCGCCTCGCCCAGGAATGCGGCGACACGCCGGCCCGGCTGCAACCCGATGCGCTGGCAAAACTGCAGAGTTA
TCGCTTCCCCGGCAACGTGCGCGAGCTGGAAAACATGCTTGCGCGTGCCTACACGCTCTGTGAAGGCGAAGAAATCAAGC
CCAGCGACCTACGGCTTTCCGATGCACCCGGCATGCCGGAGAATGGCGAAGCAAGCCTGGCGCAGATCGACAATCTTGAA
GACCACCTCGAAGAGGTCGAGCGCAAACTGATCATGCAGGCGCTGGAAGAAACCCGTTGGAATCGCACCGCCGCCGCCCA
ACGGCTGGGGCTGTCGTTCCGCTCCATGCGGTATCGGCTGAAGAAGCTGGGGCTGGACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A365PW73

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

83.521

99.327

0.83
  pilR Acinetobacter baumannii strain A118

49.237

100

0.507
  luxO Vibrio cholerae strain A1552

38.702

100

0.388