Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   KQ248_RS09010 Genome accession   NZ_CP076683
Coordinates   1967024..1968616 (-) Length   530 a.a.
NCBI ID   WP_128120141.1    Uniprot ID   A0A365PVX1
Organism   Stutzerimonas zhaodongensis strain A252     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1962024..1973616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ248_RS08995 (KQ248_08995) - 1962650..1964263 (-) 1614 WP_216707182.1 response regulator -
  KQ248_RS09000 (KQ248_09000) - 1964481..1965536 (+) 1056 WP_128120142.1 DUF2333 family protein -
  KQ248_RS09005 (KQ248_09005) pilR 1965576..1966916 (-) 1341 WP_128120176.1 sigma-54-dependent transcriptional regulator Regulator
  KQ248_RS09010 (KQ248_09010) pilS 1967024..1968616 (-) 1593 WP_128120141.1 sensor histidine kinase Regulator
  KQ248_RS09015 (KQ248_09015) - 1968606..1968842 (-) 237 WP_128120140.1 PP0621 family protein -
  KQ248_RS09020 (KQ248_09020) - 1968903..1969910 (-) 1008 WP_128120139.1 outer membrane protein assembly factor BamD -
  KQ248_RS09025 (KQ248_09025) rluD 1970200..1971174 (+) 975 WP_128120138.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KQ248_RS09030 (KQ248_09030) pgeF 1971171..1971905 (+) 735 WP_128120137.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 59212.47 Da        Isoelectric Point: 8.9507

>NTDB_id=577272 KQ248_RS09010 WP_128120141.1 1967024..1968616(-) (pilS) [Stutzerimonas zhaodongensis strain A252]
MGTERLTFFGYKGRRILRLYHLYRVVIGLVLVLLISSDLHNDLMRMTNPKAFYYGAWLYLILNIFAAVLLQNPKRELPVL
VLALLDVTLLAALFYFAGGTPSGIGNLLIVAVAIANILLHGRVGFFIAAVAATGLIYLTFYLSLSDSAASSQYVQAAALG
TLCFAAALLVQGLTRRLQVSETLARQRAEEVANLEALNAQILQRMRTGILVLDPQERVLLANQGALELLGQQSLTGERLA
PRCPEIIKGLQRWRDNPTLRPRNFKATPDGATLQPSFATLQHGVKQDTLVFLEDISQIAQKAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLQESEVLDAADLRLTQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWVHRFASEFRQTLPPQ
QIVHVDTQGSSLQTRMDPNQLIQVLTNLVQNGLRYSGQKHDQAQVWLKLFRDETSDLPVLEVLDDGAGVPAEQVQNIFEP
FFTTENKGTGLGLYISRELCESNQARLDYRERDEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=577272 KQ248_RS09010 WP_128120141.1 1967024..1968616(-) (pilS) [Stutzerimonas zhaodongensis strain A252]
GTGGGAACTGAACGCCTGACGTTTTTCGGTTACAAGGGCCGACGAATCCTTCGGCTCTATCATCTCTATCGCGTCGTAAT
CGGCTTGGTGTTGGTTCTGCTCATTAGCAGCGACCTGCACAACGATTTGATGCGCATGACCAATCCCAAGGCGTTCTACT
ACGGCGCCTGGCTCTACCTGATTCTCAACATCTTCGCAGCCGTCTTGCTGCAGAACCCCAAGCGAGAACTGCCGGTACTG
GTGCTCGCATTACTGGACGTCACCCTGCTGGCCGCACTGTTCTACTTCGCGGGCGGTACGCCAAGTGGCATCGGTAACCT
GCTGATCGTAGCGGTCGCCATCGCGAACATCCTGCTGCACGGCCGCGTCGGCTTTTTCATCGCCGCAGTCGCCGCAACCG
GCCTTATCTATCTGACGTTCTACCTCAGCCTAAGCGACAGCGCGGCAAGCAGTCAGTACGTCCAGGCTGCCGCACTTGGC
ACACTGTGCTTCGCCGCCGCACTATTGGTGCAGGGCCTTACCAGGCGGCTACAAGTCAGCGAAACCCTTGCCCGCCAGCG
CGCCGAAGAGGTCGCAAACCTCGAAGCCTTGAACGCCCAGATTCTGCAGCGCATGCGCACCGGAATCCTTGTCCTCGATC
CTCAGGAACGTGTGCTGCTTGCCAATCAGGGCGCTCTCGAGCTGCTCGGCCAACAATCACTGACTGGCGAACGACTAGCG
CCGCGCTGCCCGGAAATCATCAAGGGCCTGCAACGCTGGCGTGACAATCCGACCCTGCGGCCGCGCAACTTCAAAGCCAC
GCCTGACGGCGCTACGCTGCAGCCAAGCTTCGCTACGCTTCAGCATGGCGTCAAACAGGACACGCTGGTGTTTTTGGAAG
ACATCTCGCAGATCGCACAGAAGGCCCAGCAGTTAAAACTCGCGTCGCTTGGCCGACTGACCGCCAGTATCGCCCACGAA
ATCCGCAACCCGCTCGGCGCTATCAGCCACGCCGCGCAATTGCTGCAGGAGTCAGAGGTGCTGGACGCTGCGGATTTACG
GCTGACGCAGATCATTCAGGATCACTCGCGGCGCATGAACCTGGTCATCGAGAACGTGCTGCAGCTCTCGCGCCGACGCC
AGGCCGAGCCACAACTGCTCGACCTGAAATACTGGGTGCATCGATTCGCCAGCGAATTTCGCCAGACGCTACCGCCTCAG
CAGATTGTCCACGTGGATACTCAGGGCAGCTCACTGCAGACCCGCATGGACCCGAATCAACTGATTCAAGTGCTAACCAA
TCTGGTGCAGAACGGCCTGCGCTACAGTGGCCAGAAACATGACCAGGCACAGGTATGGCTGAAACTCTTCCGAGACGAGA
CGAGCGACCTCCCCGTATTGGAGGTACTCGACGATGGTGCAGGCGTGCCGGCCGAGCAGGTCCAGAATATCTTCGAGCCG
TTCTTCACCACCGAGAACAAGGGTACGGGGCTGGGGCTGTATATCTCGCGCGAGCTCTGCGAAAGCAATCAGGCGCGGCT
GGATTACCGTGAACGAGACGAGGGAGGCAGCTGCTTTCGTATCGTCTTTGCGCATCCGCGCAAGCTGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

PAS domain (PAS_8)

(201-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A365PVX1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

64.528

100

0.645