Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   MP387_RS09050 Genome accession   NZ_CP094226
Coordinates   1859519..1860616 (+) Length   365 a.a.
NCBI ID   WP_242746602.1    Uniprot ID   -
Organism   Streptococcus oralis strain 1648     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1854519..1865616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP387_RS09025 (MP387_09025) pgsA 1855044..1855589 (-) 546 WP_242746588.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MP387_RS09030 (MP387_09030) rodZ 1855600..1856421 (-) 822 WP_242746590.1 cytoskeleton protein RodZ -
  MP387_RS09035 (MP387_09035) - 1856457..1857740 (-) 1284 WP_242746593.1 pitrilysin family protein -
  MP387_RS09040 (MP387_09040) - 1857737..1858987 (-) 1251 WP_242746596.1 pitrilysin family protein -
  MP387_RS09045 (MP387_09045) yaaA 1859148..1859516 (+) 369 WP_242746599.1 S4 domain-containing protein YaaA -
  MP387_RS09050 (MP387_09050) recF 1859519..1860616 (+) 1098 WP_242746602.1 DNA replication/repair protein RecF Machinery gene
  MP387_RS09055 (MP387_09055) guaB 1860668..1862146 (-) 1479 WP_242746604.1 IMP dehydrogenase -
  MP387_RS09060 (MP387_09060) trpS 1862309..1863334 (-) 1026 WP_000165464.1 tryptophan--tRNA ligase -
  MP387_RS09065 (MP387_09065) - 1863530..1865152 (+) 1623 WP_000958788.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 42052.24 Da        Isoelectric Point: 9.2691

>NTDB_id=577272 MP387_RS09050 WP_242746602.1 1859519..1860616(+) (recF) [Streptococcus oralis strain 1648]
MWLQHLTIKTFRNYKEAKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNLIHFDNEQLHLSGLLQKKTSS
IPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVLFAPEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQR
NTYLKSSQKIDETFLSVLDDQLIEYGCRVIKHRIKFIKDLEKFGQKKHLEISNKLEELSIYYQSSVNFTDEEQLTSSFKM
ALDKSRSRDLFKKNTGVGPHRDDITFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITNESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFNIQSGKISVNQN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=577272 MP387_RS09050 WP_242746602.1 1859519..1860616(+) (recF) [Streptococcus oralis strain 1648]
ATGTGGCTCCAACATTTAACAATTAAAACCTTTCGAAACTACAAAGAGGCAAAAATTGATTTCAATCCAAAATTAAATGT
CTTTCTAGGTCAAAATGCACAAGGAAAAACCAATATTCTAGAAGCAATCTATTTCTTAGCCTTGACACGTAGTCATCGGA
CTCGTACAGATAAAAATCTCATTCATTTTGATAACGAGCAACTCCATCTTTCTGGCTTGCTACAGAAAAAAACAAGCTCT
ATCCCTCTAGAAATTGATTTAACACCAAAAGGGCGTGTGACTAAGGTCAATCACTTAAAACAAGCGCGCCTATCAGACTA
TATTGGACATATGAATGTTGTCCTCTTCGCACCTGAAGATCTCCAGCTAATTAAAGGAGCGCCTTCTGTCCGTCGAAAGT
TTATAGACATTGAACTGGGACAAATTAAACCAATCTACTTGTCAGACTTGTCAAACTACAACCATATACTCAAGCAAAGA
AATACTTATCTAAAATCCAGCCAGAAGATTGATGAAACATTTTTGTCAGTCTTAGATGATCAGTTAATAGAGTATGGTTG
TCGCGTTATAAAGCATCGGATAAAATTCATTAAAGACTTAGAGAAATTTGGCCAAAAAAAACACTTAGAAATTTCAAATA
AATTAGAAGAGTTGTCAATATATTATCAATCATCTGTCAACTTCACTGATGAAGAACAGCTAACAAGTTCTTTTAAAATG
GCTTTGGATAAAAGCAGATCCAGAGACTTATTTAAAAAGAATACTGGAGTTGGCCCTCATCGAGATGATATTACCTTTTA
CATCAATGGTATGGACGCTAGTTTTGGAAGCCAAGGTCAACATCGTAGCCTTGTTCTTTCTATCAAACTGGCAGAAATTG
AGCTAATGGAAAGTATTACCAACGAGTCTCCTATACTATTGCTTGATGATGTTATGAGCGAACTTGACAATACACGGCAA
CTAAAATTACTAGAAACCATTTCTCAATCTATCCAAACCTTTATCACAACAACAAGTTTAGACCACTTGCAAAATTTGCC
AGAAAATCTTAGTATCTTCAATATCCAAAGCGGTAAAATTTCTGTAAATCAAAATTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

88.219

100

0.882
  recF Bacillus subtilis subsp. subtilis str. 168

45.652

100

0.46