Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MP387_RS08400 Genome accession   NZ_CP094226
Coordinates   1722379..1722972 (-) Length   197 a.a.
NCBI ID   WP_242746285.1    Uniprot ID   -
Organism   Streptococcus oralis strain 1648     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1717379..1727972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP387_RS08365 (MP387_08365) - 1717395..1718339 (+) 945 WP_000815620.1 magnesium transporter CorA family protein -
  MP387_RS08370 (MP387_08370) - 1718351..1719028 (+) 678 WP_176553066.1 DUF1129 domain-containing protein -
  MP387_RS08375 (MP387_08375) - 1719044..1719391 (+) 348 WP_007520826.1 TfoX/Sxy family protein -
  MP387_RS08380 (MP387_08380) - 1719659..1720693 (+) 1035 WP_242748062.1 S66 peptidase family protein -
  MP387_RS08385 (MP387_08385) - 1720799..1721062 (+) 264 WP_000166112.1 SemiSWEET family transporter -
  MP387_RS08390 (MP387_08390) - 1721134..1721808 (-) 675 WP_242746281.1 type II CAAX endopeptidase family protein -
  MP387_RS08395 (MP387_08395) - 1721809..1722369 (-) 561 WP_242746283.1 DNA-3-methyladenine glycosylase I -
  MP387_RS08400 (MP387_08400) ruvA 1722379..1722972 (-) 594 WP_242746285.1 Holliday junction branch migration protein RuvA Machinery gene
  MP387_RS08405 (MP387_08405) - 1723132..1723629 (+) 498 WP_242748064.1 helix-turn-helix transcriptional regulator -
  MP387_RS08410 (MP387_08410) hexB 1723770..1725719 (-) 1950 WP_242746288.1 DNA mismatch repair endonuclease MutL Machinery gene
  MP387_RS08415 (MP387_08415) - 1726033..1726473 (+) 441 WP_242746292.1 LytTR family DNA-binding domain-containing protein -
  MP387_RS08420 (MP387_08420) - 1726470..1726928 (+) 459 WP_242746304.1 DUF3021 domain-containing protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21715.18 Da        Isoelectric Point: 5.8407

>NTDB_id=577261 MP387_RS08400 WP_242746285.1 1722379..1722972(-) (ruvA) [Streptococcus oralis strain 1648]
MYEYLKGIITKITAKYIVLEANGIGYILHVANPYAYSGQVNQETQIYVHQVVREDAQLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVASDDLPAKVAVQTSAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=577261 MP387_RS08400 WP_242746285.1 1722379..1722972(-) (ruvA) [Streptococcus oralis strain 1648]
ATGTACGAATATTTAAAAGGAATCATTACCAAAATCACTGCTAAATACATCGTCCTTGAGGCAAATGGTATCGGTTATAT
CTTGCATGTAGCCAATCCCTATGCTTACTCAGGTCAGGTTAATCAAGAAACTCAGATTTATGTGCACCAAGTTGTCCGCG
AGGATGCCCAACTGCTTTACGGCTTTCGCTCAGAAGATGAGAAAAAACTCTTCCTCAGCTTGATTTCGGTCTCAGGGATT
GGTCCTGTGTCAGCTCTTGCTATTATTGCTGCCGATGACAATGCTGGCTTGGTTCAGGCGATTGAAACTAAGAACATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCTCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTTGTGG
CTAGTGATGACCTTCCTGCTAAGGTCGCAGTGCAAACCAGCGCTGAGAACCAAGAATTGGAAGAAGCTATGGAAGCCATG
TTGGCATTGGGCTACAAGGCAACCGAGCTTAAGAAGATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAGATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

96.954

100

0.97
  ruvA Streptococcus pneumoniae R6

96.447

100

0.964
  ruvA Streptococcus pneumoniae D39

96.447

100

0.964
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.262

100

0.431