Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   KQ248_RS01400 Genome accession   NZ_CP076683
Coordinates   286467..288578 (-) Length   703 a.a.
NCBI ID   WP_128120282.1    Uniprot ID   A0A365PV48
Organism   Stutzerimonas zhaodongensis strain A252     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 281467..293578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ248_RS01385 (KQ248_01385) - 283287..284780 (-) 1494 WP_128120285.1 AAA family ATPase -
  KQ248_RS01390 (KQ248_01390) aroB 284801..285892 (-) 1092 WP_128120284.1 3-dehydroquinate synthase -
  KQ248_RS01395 (KQ248_01395) aroK 285916..286461 (-) 546 WP_128120283.1 shikimate kinase AroK -
  KQ248_RS01400 (KQ248_01400) pilQ 286467..288578 (-) 2112 WP_128120282.1 type IV pilus secretin PilQ Machinery gene
  KQ248_RS01405 (KQ248_01405) pilP 288630..289157 (-) 528 WP_128120281.1 type 4a pilus biogenesis lipoprotein PilP -
  KQ248_RS01410 (KQ248_01410) pilO 289154..289777 (-) 624 WP_046162909.1 type 4a pilus biogenesis protein PilO -
  KQ248_RS01415 (KQ248_01415) pilN 289774..290346 (-) 573 WP_128120280.1 type 4a pilus biogenesis protein PilN -
  KQ248_RS01420 (KQ248_01420) comM 290346..291410 (-) 1065 WP_045430802.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 703 a.a.        Molecular weight: 75530.64 Da        Isoelectric Point: 4.8916

>NTDB_id=577261 KQ248_RS01400 WP_128120282.1 286467..288578(-) (pilQ) [Stutzerimonas zhaodongensis strain A252]
MNTTLTRLGLSLLAALISPALLAANLNSLDVASLPGDRVELKLAFDEPVPTPRGYTLDQPARIALDLPGVSSKLGSKNHE
LGVGNARSVTVVEAQGRTRLIVNLTSLVPYSTRVDGNNLFVVLGETASAPAAASAAPAVSTKPVAPNASLAIGKSISNID
FRRGDDGAGNVVITLSDPSISPSIEEQGGKIRVSFAKTQLPESLRVRLDVQDFATPVKFVDSSSKADGASIAIEPSGRYD
YLAYQTDDKLTISVKPLSEADAEQRKAEHFTYSGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGNITLRLQNVPW
DQALDLVLKTKGLDKRQVGNVLLVAPADEIAARERQELESKRQIAELAPLRREVVQVNYAKAADIAKLFQSVTAVDGQAD
ERGSIAVDDRTNNIIAYQTQERLDELRRIVTQLDIPVRQVMIEARIVEANVGYDKALGVRWGGNVVNDQWTAYGKDGARG
VDDDGILRPPGTKKVGSYTLEEGTAPVPFVDMGVLGSTSGVGIGFLSDHLLLDLQLSAMEKTGNGEVVSQPKVMTADKET
AKILKGTEIPYQEASSSGATSTSFKEAALSLEVTPQITPDNRIIMEVKVTKDAPDFRNALNGVPPIDKNEVNAKVLVNDG
ETVVIGGVFSNSQSKSVDKVPFLGDVPYLGRLFRRDVVTDAKSELLVFLTPRILNHQAIAVNR

Nucleotide


Download         Length: 2112 bp        

>NTDB_id=577261 KQ248_RS01400 WP_128120282.1 286467..288578(-) (pilQ) [Stutzerimonas zhaodongensis strain A252]
ATGAATACCACTCTCACTCGTCTCGGTTTGTCGTTGCTGGCAGCGCTCATTTCGCCTGCATTGCTGGCAGCAAATCTGAA
TTCTCTTGATGTCGCATCGTTGCCCGGTGACCGCGTTGAGCTGAAGCTGGCTTTCGACGAACCGGTTCCCACTCCTCGTG
GCTATACGCTCGACCAGCCAGCCCGCATCGCTCTTGATCTGCCAGGCGTATCCAGCAAGCTGGGGTCGAAAAATCATGAG
CTGGGTGTCGGTAATGCGCGAAGCGTGACCGTGGTGGAGGCGCAGGGGCGGACCCGACTCATCGTGAATCTCACTTCTCT
GGTTCCGTACTCGACCCGTGTTGACGGCAACAATCTGTTCGTTGTGCTCGGCGAAACCGCTAGTGCCCCAGCTGCTGCTT
CAGCTGCTCCTGCGGTCTCGACGAAACCGGTCGCACCAAACGCTTCCTTGGCTATTGGAAAATCCATCAGCAATATCGAT
TTTCGCCGTGGGGACGACGGGGCCGGCAATGTAGTCATCACCTTGTCTGACCCTTCGATCAGTCCAAGTATTGAAGAGCA
AGGCGGTAAAATTCGAGTTTCCTTCGCCAAGACGCAATTGCCGGAATCGCTGCGTGTTCGGCTGGATGTCCAAGACTTTG
CTACGCCAGTTAAATTTGTCGATTCAAGCAGCAAGGCAGATGGCGCCAGTATTGCTATCGAGCCCAGCGGTCGATACGAC
TACCTGGCGTACCAGACCGACGACAAGCTGACCATTAGCGTCAAGCCGCTCAGCGAGGCAGATGCCGAGCAACGCAAGGC
CGAACATTTCACCTATTCCGGTGAGAAGTTGTCGCTGAATTTCCAGGACATTGACGTTCGCTCTGTTCTGCAGCTAATAG
CGGATTTTACTGATCTGAATCTGGTGGCTAGCGATACCGTACAGGGCAACATCACTCTACGTTTGCAGAACGTACCTTGG
GATCAGGCGCTGGACCTGGTGCTGAAAACCAAAGGTCTCGACAAGCGCCAGGTGGGGAATGTTCTGCTGGTGGCGCCGGC
AGACGAGATTGCCGCGCGGGAGCGTCAAGAGTTGGAGTCCAAGCGGCAAATTGCCGAGCTGGCGCCCCTCCGCCGTGAAG
TCGTCCAGGTGAATTACGCTAAGGCAGCGGATATTGCGAAGCTCTTCCAGTCGGTGACTGCGGTTGATGGGCAGGCTGAC
GAGCGGGGCTCCATCGCGGTTGATGACCGCACAAACAACATCATCGCCTACCAAACCCAGGAACGTTTGGATGAACTACG
CCGTATCGTAACTCAGCTGGATATTCCAGTTCGCCAGGTCATGATTGAGGCGCGGATTGTTGAGGCAAACGTTGGCTACG
ATAAAGCGTTGGGCGTACGGTGGGGTGGTAACGTTGTGAACGATCAGTGGACTGCCTATGGCAAGGATGGCGCCAGGGGA
GTCGACGACGACGGGATCTTGAGACCGCCAGGAACGAAAAAGGTCGGTAGTTATACGCTGGAAGAGGGCACGGCTCCGGT
TCCTTTTGTGGACATGGGAGTACTAGGGAGCACGTCCGGCGTGGGCATTGGCTTTCTTTCTGATCACCTCCTATTGGATC
TTCAACTCTCTGCAATGGAGAAAACCGGAAACGGAGAGGTCGTATCCCAGCCGAAGGTCATGACGGCGGACAAAGAAACG
GCGAAGATTCTGAAGGGTACGGAAATTCCCTATCAGGAGGCCAGCTCCAGTGGTGCTACAAGTACCTCATTCAAAGAAGC
GGCTCTATCCTTGGAAGTAACCCCTCAAATCACGCCGGATAACCGCATCATTATGGAGGTCAAGGTCACTAAAGACGCAC
CGGACTTCCGCAATGCGTTGAACGGCGTCCCTCCAATCGATAAGAACGAAGTCAACGCCAAGGTTTTGGTAAACGATGGA
GAAACTGTCGTGATCGGTGGTGTGTTCTCCAACAGCCAGTCGAAAAGCGTCGACAAGGTTCCGTTTCTAGGCGATGTGCC
TTATCTTGGCCGCTTGTTTCGTCGCGATGTCGTGACGGATGCCAAGTCTGAACTGTTGGTGTTCCTTACACCTAGAATCC
TGAACCATCAGGCCATCGCCGTGAATCGTTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(373-439)

Bacterial type II and III secretion system protein (Secretin)

(538-694)

Secretin and TonB N terminus short domain (STN)

(300-346)

AMIN domain (AMIN)

(38-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A365PV48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

73.81

100

0.75
  comQ Acinetobacter baylyi ADP1

42.197

98.435

0.415
  pilQ Acinetobacter baumannii D1279779

39.51

100

0.413
  pilQ Acinetobacter baumannii strain A118

39.51

100

0.413
  pilQ Legionella pneumophila strain ERS1305867

37.01

98.009

0.363
  pilQ Legionella pneumophila strain Lp02

37.01

98.009

0.363