Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   MP387_RS00100 Genome accession   NZ_CP094226
Coordinates   19966..20202 (+) Length   78 a.a.
NCBI ID   WP_242746665.1    Uniprot ID   -
Organism   Streptococcus oralis strain 1648     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 14966..25202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP387_RS00100 (MP387_00100) comW 19966..20202 (+) 237 WP_242746665.1 sigma(X)-activator ComW Regulator
  MP387_RS00105 (MP387_00105) - 20444..21730 (+) 1287 WP_242746668.1 adenylosuccinate synthase -
  MP387_RS00110 (MP387_00110) tadA 21931..22398 (+) 468 WP_242746670.1 tRNA adenosine(34) deaminase TadA -
  MP387_RS00120 (MP387_00120) - 22584..23027 (+) 444 WP_242746679.1 dUTP diphosphatase -
  MP387_RS00125 (MP387_00125) - 23091..23579 (+) 489 WP_242746683.1 hypothetical protein -
  MP387_RS00130 (MP387_00130) radA 23618..24982 (+) 1365 WP_278192668.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9498.07 Da        Isoelectric Point: 9.3040

>NTDB_id=577170 MP387_RS00100 WP_242746665.1 19966..20202(+) (comW) [Streptococcus oralis strain 1648]
MLQKFYDRAFVFLKLVEQEYASLGQSCSEWESLHLRFLLYYLIRFKIKSDRDFSLYHFKTAYRLYLDKLLQGGTTLIQ

Nucleotide


Download         Length: 237 bp        

>NTDB_id=577170 MP387_RS00100 WP_242746665.1 19966..20202(+) (comW) [Streptococcus oralis strain 1648]
ATGCTTCAGAAATTTTATGATCGAGCATTCGTCTTTTTGAAACTAGTTGAACAAGAATATGCCTCTTTAGGCCAGAGTTG
TTCAGAGTGGGAATCACTTCATCTTCGGTTTTTACTATATTATTTAATCCGATTTAAAATAAAAAGTGATAGGGACTTTT
CACTATATCACTTTAAAACAGCTTATCGTCTATATCTAGATAAATTACTACAAGGTGGTACAACTCTCATTCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus mitis NCTC 12261

47.143

89.744

0.423
  comW Streptococcus mitis SK321

47.143

89.744

0.423
  comW Streptococcus pneumoniae Rx1

44.286

89.744

0.397
  comW Streptococcus pneumoniae D39

44.286

89.744

0.397
  comW Streptococcus pneumoniae R6

44.286

89.744

0.397
  comW Streptococcus pneumoniae TIGR4

44.286

89.744

0.397