Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPG60_RS02830 Genome accession   NZ_CP094177
Coordinates   585396..585947 (+) Length   183 a.a.
NCBI ID   WP_245085441.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe062     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 580396..590947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG60_RS02815 (MPG60_02815) cysS 580575..581972 (-) 1398 WP_021308801.1 cysteine--tRNA ligase -
  MPG60_RS02820 (MPG60_02820) murJ 581973..583433 (-) 1461 WP_245085437.1 murein biosynthesis integral membrane protein MurJ -
  MPG60_RS02825 (MPG60_02825) - 583526..585370 (+) 1845 WP_245085439.1 FapA family protein -
  MPG60_RS02830 (MPG60_02830) ruvA 585396..585947 (+) 552 WP_245085441.1 Holliday junction branch migration protein RuvA Machinery gene
  MPG60_RS02835 (MPG60_02835) - 586053..586517 (+) 465 Protein_539 DUF3519 domain-containing protein -
  MPG60_RS07530 - 586528..586656 (+) 129 WP_280636017.1 hypothetical protein -
  MPG60_RS02840 (MPG60_02840) - 587179..587904 (-) 726 WP_245085443.1 NYN domain-containing protein -
  MPG60_RS02845 (MPG60_02845) ruvC 588035..588517 (+) 483 WP_245047137.1 crossover junction endodeoxyribonuclease RuvC -
  MPG60_RS02850 (MPG60_02850) - 588529..590904 (-) 2376 WP_245085446.1 TonB-dependent receptor -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20144.72 Da        Isoelectric Point: 8.5032

>NTDB_id=577103 MPG60_RS02830 WP_245085441.1 585396..585947(+) (ruvA) [Helicobacter pylori strain Hpfe062]
MIVGLMGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETGPARNEVFLALESLGFKSAEINKV
LKTLKPHLNTEAAIKEALQQLHS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=577103 MPG60_RS02830 WP_245085441.1 585396..585947(+) (ruvA) [Helicobacter pylori strain Hpfe062]
ATGATAGTGGGTTTGATGGGGGTTGTGGAAAAAATCTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTTCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTAATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACTGGTCCTGCACGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGTTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAACACCGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCACTCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(139-182)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

92.896

100

0.929
  ruvA Streptococcus pneumoniae R6

34.359

100

0.366
  ruvA Streptococcus pneumoniae D39

34.359

100

0.366
  ruvA Bacillus subtilis subsp. subtilis str. 168

32.836

100

0.361
  ruvA Streptococcus pneumoniae TIGR4

33.846

100

0.361