Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | KQU62_RS00360 | Genome accession | NZ_CP076660 |
| Coordinates | 70722..71225 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain SG511 Berlin | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 66662..93628 | 70722..71225 | within | 0 |
Gene organization within MGE regions
Location: 66662..93628
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KQU62_RS00330 (KQU62_00330) | - | 66662..67507 (+) | 846 | WP_001573568.1 | ParB/RepB/Spo0J family partition protein | - |
| KQU62_RS00335 (KQU62_00335) | - | 67661..68542 (+) | 882 | WP_000373076.1 | mechanosensitive ion channel family protein | - |
| KQU62_RS00340 (KQU62_00340) | - | 68572..68775 (+) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| KQU62_RS00345 (KQU62_00345) | ychF | 68787..69884 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| KQU62_RS00350 (KQU62_00350) | - | 69970..70161 (-) | 192 | WP_001052483.1 | hypothetical protein | - |
| KQU62_RS00355 (KQU62_00355) | rpsF | 70405..70701 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| KQU62_RS00360 (KQU62_00360) | ssbA | 70722..71225 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| KQU62_RS00365 (KQU62_00365) | rpsR | 71277..71519 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| KQU62_RS00370 (KQU62_00370) | - | 71751..72584 (-) | 834 | WP_180372434.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| KQU62_RS00375 (KQU62_00375) | - | 72585..73799 (-) | 1215 | WP_123090135.1 | site-specific integrase | - |
| KQU62_RS00380 (KQU62_00380) | - | 74098..74832 (-) | 735 | WP_000142630.1 | helix-turn-helix domain-containing protein | - |
| KQU62_RS00385 (KQU62_00385) | - | 74982..75194 (+) | 213 | WP_053040300.1 | helix-turn-helix transcriptional regulator | - |
| KQU62_RS00390 (KQU62_00390) | - | 75195..75467 (+) | 273 | WP_053040301.1 | helix-turn-helix domain-containing protein | - |
| KQU62_RS00395 (KQU62_00395) | - | 75479..75625 (+) | 147 | WP_000784885.1 | hypothetical protein | - |
| KQU62_RS00400 (KQU62_00400) | - | 75618..75827 (+) | 210 | WP_001058492.1 | hypothetical protein | - |
| KQU62_RS00405 (KQU62_00405) | - | 75830..76150 (+) | 321 | WP_123090134.1 | DUF1474 family protein | - |
| KQU62_RS00410 (KQU62_00410) | - | 76214..77083 (+) | 870 | WP_053040303.1 | primase alpha helix C-terminal domain-containing protein | - |
| KQU62_RS00415 (KQU62_00415) | - | 77100..78569 (+) | 1470 | WP_053040304.1 | virulence-associated E family protein | - |
| KQU62_RS00420 (KQU62_00420) | - | 78848..79075 (+) | 228 | Protein_85 | pathogenicity island protein | - |
| KQU62_RS00430 (KQU62_00430) | - | 80721..80873 (+) | 153 | Protein_87 | pathogenicity island protein | - |
| KQU62_RS00435 (KQU62_00435) | - | 80866..81138 (+) | 273 | WP_000477476.1 | hypothetical protein | - |
| KQU62_RS00440 (KQU62_00440) | - | 81140..81781 (+) | 642 | WP_123090293.1 | pathogenicity island protein | - |
| KQU62_RS00445 (KQU62_00445) | - | 82319..82660 (+) | 342 | WP_001190616.1 | hypothetical protein | - |
| KQU62_RS00450 (KQU62_00450) | - | 82672..83250 (+) | 579 | WP_065315973.1 | pathogenicity island protein | - |
| KQU62_RS00455 (KQU62_00455) | - | 83268..83486 (+) | 219 | WP_000448775.1 | capsid morphogenesis B protein | - |
| KQU62_RS00460 (KQU62_00460) | - | 83537..84064 (+) | 528 | WP_160200125.1 | spore coat protein | - |
| KQU62_RS00465 (KQU62_00465) | - | 84196..84408 (+) | 213 | WP_045181470.1 | hypothetical protein | - |
| KQU62_RS00470 (KQU62_00470) | - | 84405..84974 (+) | 570 | WP_115276898.1 | terminase small subunit | - |
| KQU62_RS00475 (KQU62_00475) | - | 85431..85922 (+) | 492 | WP_000770704.1 | hypothetical protein | - |
| KQU62_RS00480 (KQU62_00480) | - | 85909..86538 (+) | 630 | WP_000742266.1 | hypothetical protein | - |
| KQU62_RS00485 (KQU62_00485) | - | 86543..87484 (+) | 942 | WP_000323493.1 | hypothetical protein | - |
| KQU62_RS13535 | - | 87680..87811 (+) | 132 | WP_000247644.1 | hypothetical protein | - |
| KQU62_RS13465 | - | 87958..88056 (+) | 99 | Protein_100 | hypothetical protein | - |
| KQU62_RS00495 (KQU62_00495) | - | 88317..88469 (+) | 153 | WP_001788502.1 | hypothetical protein | - |
| KQU62_RS00500 (KQU62_00500) | - | 88540..88650 (+) | 111 | WP_000139423.1 | hypothetical protein | - |
| KQU62_RS00505 (KQU62_00505) | - | 88652..88837 (+) | 186 | WP_001286805.1 | hypothetical protein | - |
| KQU62_RS00510 (KQU62_00510) | - | 89594..90601 (-) | 1008 | WP_001080636.1 | Abi family protein | - |
| KQU62_RS00515 (KQU62_00515) | - | 90607..91265 (-) | 659 | Protein_105 | tyrosine-type recombinase/integrase | - |
| KQU62_RS00520 (KQU62_00520) | - | 91558..91926 (+) | 369 | WP_000849155.1 | YxeA family protein | - |
| KQU62_RS00525 (KQU62_00525) | - | 92107..92679 (+) | 573 | WP_000769723.1 | PepSY domain-containing protein | - |
| KQU62_RS00530 (KQU62_00530) | - | 92817..93080 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| KQU62_RS00535 (KQU62_00535) | - | 93374..93628 (+) | 255 | WP_000466746.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=577094 KQU62_RS00360 WP_000934799.1 70722..71225(+) (ssbA) [Staphylococcus aureus strain SG511 Berlin]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=577094 KQU62_RS00360 WP_000934799.1 70722..71225(+) (ssbA) [Staphylococcus aureus strain SG511 Berlin]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |