Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KPL75_RS13960 Genome accession   NZ_CP076653
Coordinates   2657171..2657692 (-) Length   173 a.a.
NCBI ID   WP_002113227.1    Uniprot ID   A0A1D3MWM3
Organism   Bacillus sp. NP247     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2652171..2662692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPL75_RS13940 (KPL75_13935) rplI 2653382..2653828 (-) 447 WP_219916769.1 50S ribosomal protein L9 -
  KPL75_RS13945 (KPL75_13940) - 2653825..2655798 (-) 1974 WP_219916770.1 DHH family phosphoesterase -
  KPL75_RS13950 (KPL75_13945) - 2655877..2656812 (-) 936 WP_219916771.1 YybS family protein -
  KPL75_RS13955 (KPL75_13950) rpsR 2656893..2657126 (-) 234 WP_000918874.1 30S ribosomal protein S18 -
  KPL75_RS13960 (KPL75_13955) ssbA 2657171..2657692 (-) 522 WP_002113227.1 single-stranded DNA-binding protein Machinery gene
  KPL75_RS13965 (KPL75_13960) rpsF 2657719..2658009 (-) 291 WP_001233782.1 30S ribosomal protein S6 -
  KPL75_RS13970 (KPL75_13965) ychF 2658201..2659301 (-) 1101 WP_219916772.1 redox-regulated ATPase YchF -
  KPL75_RS13975 (KPL75_13970) - 2659417..2659614 (-) 198 WP_000436054.1 DUF951 domain-containing protein -
  KPL75_RS13980 (KPL75_13975) - 2659635..2660492 (-) 858 WP_016096413.1 mechanosensitive ion channel family protein -
  KPL75_RS13985 (KPL75_13980) yyaC 2660753..2661349 (+) 597 WP_002089953.1 spore protease YyaC -
  KPL75_RS13990 (KPL75_13985) spo0J 2661370..2662221 (-) 852 WP_171902578.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18751.54 Da        Isoelectric Point: 4.9222

>NTDB_id=577002 KPL75_RS13960 WP_002113227.1 2657171..2657692(-) (ssbA) [Bacillus sp. NP247]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNPGNSGNTGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=577002 KPL75_RS13960 WP_002113227.1 2657171..2657692(-) (ssbA) [Bacillus sp. NP247]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTGGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGACGGACGTCTTCAAACTCGT
AATTACGATGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAGAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATCCGGGTAACTCTGGTAACACTGGTAACTCTGGATTTACGAAGAATGACGATCCATTTTCGAATGTT
GGTCAACCGATTGACATTTCGGACGACGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D3MWM3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.621

100

0.723
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

35.165

100

0.37