Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   LEUCM_RS07915 Genome accession   NZ_AP017929
Coordinates   1586013..1586687 (-) Length   224 a.a.
NCBI ID   WP_011374555.1    Uniprot ID   Q38XC8
Organism   Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1581013..1591687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEUCM_RS07890 (LACBS_01565) minD 1581812..1582606 (-) 795 WP_016265029.1 septum site-determining protein MinD -
  LEUCM_RS07895 (LACBS_01566) - 1582608..1583279 (-) 672 WP_016265028.1 septum site-determining protein MinC -
  LEUCM_RS07900 (LACBS_01567) mreD 1583296..1583826 (-) 531 WP_016265027.1 rod shape-determining protein MreD -
  LEUCM_RS07905 (LACBS_01568) mreC 1583828..1584688 (-) 861 WP_011374557.1 rod shape-determining protein MreC -
  LEUCM_RS07910 (LACBS_01569) - 1584830..1585849 (-) 1020 WP_035146965.1 rod shape-determining protein -
  LEUCM_RS07915 (LACBS_01570) ysxA/radC 1586013..1586687 (-) 675 WP_011374555.1 DNA repair protein RadC Machinery gene
  LEUCM_RS07920 (LACBS_01571) - 1586761..1587411 (-) 651 WP_016265026.1 HAD family phosphatase -
  LEUCM_RS07925 (LACBS_01572) - 1587412..1588716 (-) 1305 WP_016265025.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  LEUCM_RS07930 (LACBS_01573) - 1588838..1591486 (-) 2649 WP_016265024.1 valine--tRNA ligase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25083.87 Da        Isoelectric Point: 6.9595

>NTDB_id=57699 LEUCM_RS07915 WP_011374555.1 1586013..1586687(-) (ysxA/radC) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
MLTSQSKLQPREQVALYGAASLSDEQLATVILRSGTQHLPVEVVAQRLLQRYPDFQDLEQADLVQLRQIEGIGPVKAIEL
QAICELSRRIQNQRTLRFGVVASSQMVGQRMIESLAGETQEQLLAVYLDVKNQIIQIKQLYLGTLNSSVAHPREVFKWAV
QYSAAKFILVHNHPSGQLAPSTQDINFTKRIVNCGQLMGITCLDHLIIGSSQYLSLREEGYLVD

Nucleotide


Download         Length: 675 bp        

>NTDB_id=57699 LEUCM_RS07915 WP_011374555.1 1586013..1586687(-) (ysxA/radC) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
ATGTTAACGAGTCAATCAAAGTTACAACCCAGAGAGCAAGTCGCACTGTATGGTGCGGCCAGTCTAAGTGATGAACAATT
AGCAACCGTAATTTTACGTTCAGGCACCCAACATTTACCCGTTGAAGTCGTTGCACAACGATTATTGCAACGCTATCCCG
ACTTTCAAGATCTTGAACAAGCGGACTTAGTACAATTACGTCAAATCGAAGGTATTGGACCGGTTAAAGCGATTGAACTC
CAAGCGATTTGTGAGTTAAGTCGGCGCATTCAAAATCAGCGGACATTACGTTTTGGTGTAGTGGCTTCTAGTCAGATGGT
AGGCCAACGGATGATTGAATCCTTAGCGGGAGAGACACAAGAACAGCTATTAGCGGTCTATTTAGATGTTAAAAATCAGA
TTATTCAGATTAAGCAACTCTATCTGGGTACACTTAATAGTTCTGTTGCACATCCGCGGGAAGTCTTTAAATGGGCGGTT
CAGTATTCAGCGGCTAAGTTTATCTTGGTCCATAATCACCCGAGCGGTCAATTGGCACCATCAACGCAAGATATTAACTT
TACAAAAAGAATTGTTAATTGCGGACAGTTGATGGGGATTACTTGTTTGGATCATTTAATCATTGGTAGCTCACAGTACT
TAAGCCTACGTGAAGAAGGGTATCTAGTCGATTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(7-78)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38XC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

43.056

96.429

0.415
  radC Streptococcus pneumoniae TIGR4

41.553

97.768

0.406
  radC Streptococcus pneumoniae R6

41.096

97.768

0.402
  radC Streptococcus pneumoniae D39

41.096

97.768

0.402
  radC Streptococcus gordonii str. Challis substr. CH1

38.356

97.768

0.375

Multiple sequence alignment