Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KP725_RS22585 Genome accession   NZ_CP076645
Coordinates   4625270..4625806 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain MSI001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4620270..4630806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP725_RS22565 (KP725_22565) soxR 4621998..4622462 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  KP725_RS22570 (KP725_22570) soxS 4622548..4622871 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  KP725_RS22575 (KP725_22575) pdeC 4622874..4624460 (-) 1587 WP_000019531.1 c-di-GMP phosphodiesterase PdeC -
  KP725_RS22580 (KP725_22580) yjcB 4624890..4625171 (+) 282 WP_001295689.1 YjcB family protein -
  KP725_RS22585 (KP725_22585) ssb 4625270..4625806 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  KP725_RS22590 (KP725_22590) uvrA 4626060..4628882 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  KP725_RS22595 (KP725_22595) yjbR 4628917..4629273 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  KP725_RS22600 (KP725_22600) yjbQ 4629277..4629693 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KP725_RS22605 (KP725_22605) aphA 4629804..4630445 (-) 642 Protein_4497 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=576897 KP725_RS22585 WP_000168305.1 4625270..4625806(-) (ssb) [Escherichia coli strain MSI001]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=576897 KP725_RS22585 WP_000168305.1 4625270..4625806(-) (ssb) [Escherichia coli strain MSI001]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489