Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   KNV97_RS12445 Genome accession   NZ_CP076643
Coordinates   1396437..1397021 (-) Length   194 a.a.
NCBI ID   WP_218563250.1    Uniprot ID   A0A975YPM5
Organism   Vibrio ostreae strain OG9-811     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1391437..1402021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNV97_RS12425 (KNV97_12425) - 1391501..1392769 (-) 1269 WP_218563248.1 DUF945 family protein -
  KNV97_RS12430 (KNV97_12430) - 1392987..1394906 (+) 1920 WP_218563249.1 ATP-binding protein -
  KNV97_RS12435 (KNV97_12435) - 1395035..1395532 (+) 498 WP_136484132.1 response regulator -
  KNV97_RS12440 (KNV97_12440) - 1395789..1396337 (+) 549 WP_136484133.1 hypothetical protein -
  KNV97_RS12445 (KNV97_12445) tfoX 1396437..1397021 (-) 585 WP_218563250.1 TfoX/Sxy family DNA transformation protein Regulator
  KNV97_RS12450 (KNV97_12450) - 1397385..1398305 (+) 921 WP_136484135.1 HDOD domain-containing protein -
  KNV97_RS12455 (KNV97_12455) - 1398326..1399231 (+) 906 WP_136484136.1 lysine exporter LysO family protein -
  KNV97_RS12460 (KNV97_12460) - 1399392..1399904 (+) 513 WP_218563251.1 hypothetical protein -
  KNV97_RS12465 (KNV97_12465) panP 1400046..1401689 (+) 1644 WP_136484138.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22449.98 Da        Isoelectric Point: 9.6283

>NTDB_id=576812 KNV97_RS12445 WP_218563250.1 1396437..1397021(-) (tfoX) [Vibrio ostreae strain OG9-811]
MSTNRYISFLNQFGPLEKRSMFGGTGLFRHHSMFALLAQGRLFIRGGCVLDDEFLALGCEKFRHIKKQTTATVNYYDVTD
LYRAEKACLDDLIHRSIEYAVASRCRQNQGEVKRLRDMPNMHFRLERMVKKAGIKDVATFVDLGAPKVFNKVRDIYGNDL
DVSLLWKFAGAIEGVHWELLQEPRKRQLLDSCRQ

Nucleotide


Download         Length: 585 bp        

>NTDB_id=576812 KNV97_RS12445 WP_218563250.1 1396437..1397021(-) (tfoX) [Vibrio ostreae strain OG9-811]
ATGAGTACAAACAGATACATCTCATTCCTCAATCAATTTGGTCCGTTGGAGAAGCGTTCCATGTTCGGTGGTACAGGATT
GTTCCGGCATCACTCTATGTTTGCATTATTGGCACAAGGGCGCTTGTTTATTCGTGGCGGCTGTGTGTTGGATGATGAGT
TTCTGGCTTTAGGATGTGAAAAATTCCGTCATATAAAAAAGCAGACCACGGCGACAGTTAATTATTATGACGTGACGGAT
TTATACCGTGCTGAGAAGGCTTGCCTTGACGATTTGATCCATCGTTCGATTGAGTATGCAGTGGCATCGCGCTGTCGCCA
GAACCAGGGTGAAGTGAAGCGTTTAAGAGATATGCCGAATATGCATTTCAGACTGGAGCGCATGGTAAAAAAAGCGGGCA
TCAAGGACGTGGCGACTTTCGTTGATCTGGGAGCGCCAAAGGTCTTTAATAAAGTCCGCGATATTTACGGCAATGATCTG
GATGTCAGTCTGCTGTGGAAGTTTGCTGGCGCTATCGAAGGAGTGCATTGGGAACTGCTCCAGGAACCGCGTAAACGCCA
GTTGCTCGACAGTTGTCGGCAGTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(10-99)

TfoX C-terminal domain (TfoX_C)

(113-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

61.856

100

0.619
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

61.856

100

0.619
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

61.856

100

0.619
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

61.856

100

0.619
  tfoX Vibrio cholerae strain A1552

61.856

100

0.619
  tfoX Vibrio parahaemolyticus RIMD 2210633

57.812

98.969

0.572
  tfoX Vibrio campbellii strain DS40M4

55.44

99.485

0.552
  tfoX Aliivibrio fischeri ES114

51.596

96.907

0.5