Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPG84_RS02840 Genome accession   NZ_CP094164
Coordinates   594387..594938 (+) Length   183 a.a.
NCBI ID   WP_000635144.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0012     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 589387..599938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG84_RS02825 (MPG84_02825) cysS 589562..590959 (-) 1398 WP_245059872.1 cysteine--tRNA ligase -
  MPG84_RS02830 (MPG84_02830) murJ 590960..592420 (-) 1461 WP_245059874.1 murein biosynthesis integral membrane protein MurJ -
  MPG84_RS02835 (MPG84_02835) - 592518..594362 (+) 1845 WP_245059876.1 FapA family protein -
  MPG84_RS02840 (MPG84_02840) ruvA 594387..594938 (+) 552 WP_000635144.1 Holliday junction branch migration protein RuvA Machinery gene
  MPG84_RS02845 (MPG84_02845) - 595246..597609 (+) 2364 WP_245060163.1 hypothetical protein -
  MPG84_RS02850 (MPG84_02850) - 597992..598717 (-) 726 WP_000646759.1 NYN domain-containing protein -
  MPG84_RS02855 (MPG84_02855) ruvC 598849..599322 (+) 474 WP_245059878.1 crossover junction endodeoxyribonuclease RuvC -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20148.73 Da        Isoelectric Point: 9.4311

>NTDB_id=576736 MPG84_RS02840 WP_000635144.1 594387..594938(+) (ruvA) [Helicobacter pylori strain Hpfe0012]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPARNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=576736 MPG84_RS02840 WP_000635144.1 594387..594938(+) (ruvA) [Helicobacter pylori strain Hpfe0012]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGCACATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTTCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTAATTAAAG
AAGATGCACATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACTAGCCCTGCACGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGTGCTGAAATCAATAAAGTT
TTAAAAACCTTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAGCAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(139-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

94.536

100

0.945
  ruvA Bacillus subtilis subsp. subtilis str. 168

32.836

100

0.361
  ruvA Streptococcus pneumoniae TIGR4

33.846

100

0.361
  ruvA Streptococcus pneumoniae R6

33.846

100

0.361
  ruvA Streptococcus pneumoniae D39

33.846

100

0.361