Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   LEUCM_RS05030 Genome accession   NZ_AP017929
Coordinates   1005774..1006448 (-) Length   224 a.a.
NCBI ID   WP_025016060.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1000774..1011448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEUCM_RS05010 (LACBS_00981) nrdG 1001266..1001847 (+) 582 WP_016265498.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  LEUCM_RS05015 (LACBS_00982) - 1002093..1003388 (+) 1296 WP_016265497.1 PTS sugar transporter subunit IIC -
  LEUCM_RS05020 (LACBS_00983) - 1003421..1004587 (-) 1167 WP_016265496.1 hypothetical protein -
  LEUCM_RS05025 (LACBS_00984) - 1004697..1005764 (-) 1068 WP_016265495.1 HAMP domain-containing histidine kinase -
  LEUCM_RS05030 (LACBS_00985) braR 1005774..1006448 (-) 675 WP_025016060.1 response regulator transcription factor Regulator
  LEUCM_RS05035 (LACBS_00986) - 1006588..1007364 (+) 777 WP_011375145.1 ABC transporter ATP-binding protein -
  LEUCM_RS05040 (LACBS_00987) - 1007342..1009441 (+) 2100 WP_025016059.1 ABC transporter permease -
  LEUCM_RS05045 (LACBS_00988) - 1009459..1010244 (+) 786 WP_016265492.1 DUF975 family protein -
  LEUCM_RS05050 (LACBS_00989) - 1010374..1011114 (+) 741 WP_025016058.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 26009.05 Da        Isoelectric Point: 4.8271

>NTDB_id=57666 LEUCM_RS05030 WP_025016060.1 1005774..1006448(-) (braR) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
MFEIMIVEDDPTIANLIAENLEKWQLKAIIPDDFDTIFDRFLTDKPHLVLLDINLPVYDGFYWCRKIREVSKVPIIFISS
RSTNMDMVMSMNMGGYDFVNKPFSMEVLIAKINALLRRTYNYVDQNTDVIEHNGLLINLQSGGAQVGDTVVDLSKNEYKL
LQFLMRQHGQIVSREKLLRALWDDERFVDDNTLTVNINRLRKKIEQAGLEDYIQTKIGQGYIIP

Nucleotide


Download         Length: 675 bp        

>NTDB_id=57666 LEUCM_RS05030 WP_025016060.1 1005774..1006448(-) (braR) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
ATGTTTGAAATTATGATTGTTGAAGATGATCCTACAATTGCTAACTTGATTGCTGAAAACTTAGAGAAATGGCAGTTAAA
AGCCATTATCCCCGATGATTTCGATACCATTTTTGACCGTTTTTTAACGGATAAACCCCACTTAGTCCTACTAGATATCA
ATTTACCCGTCTATGACGGTTTCTATTGGTGTCGTAAAATTCGTGAAGTTTCTAAAGTGCCGATTATCTTCATCTCTAGC
CGCAGTACTAATATGGATATGGTGATGTCAATGAACATGGGTGGCTATGATTTTGTTAACAAGCCCTTTTCAATGGAAGT
CTTAATCGCTAAAATCAATGCGCTTTTACGCCGGACCTATAACTATGTCGATCAAAATACAGACGTCATCGAACATAACG
GCCTTCTAATTAACTTACAAAGTGGTGGGGCTCAAGTTGGTGATACTGTCGTTGACCTCTCTAAAAATGAATATAAGTTA
CTCCAATTTTTGATGCGCCAACACGGTCAAATTGTCAGTCGTGAAAAACTCCTACGGGCGTTATGGGACGACGAACGTTT
TGTCGATGACAATACATTAACCGTCAATATCAATCGGCTGCGTAAAAAAATCGAACAAGCCGGTTTAGAAGACTATATTC
AAACTAAAATCGGCCAAGGCTACATCATCCCATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

46.119

97.768

0.451

Multiple sequence alignment