Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OAN307_RS11970 Genome accession   NC_020911
Coordinates   2369663..2370205 (-) Length   180 a.a.
NCBI ID   WP_015499993.1    Uniprot ID   M9RDW4
Organism   Octadecabacter antarcticus 307     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2364663..2375205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OAN307_RS11950 (OAN307_c23560) - 2365002..2365949 (-) 948 WP_015499989.1 tyrosine recombinase -
  OAN307_RS11955 (OAN307_c23570) - 2365946..2367541 (-) 1596 WP_044043621.1 hypothetical protein -
  OAN307_RS28965 - 2367541..2367684 (-) 144 WP_187292593.1 hypothetical protein -
  OAN307_RS11960 (OAN307_c23580) - 2367891..2368472 (+) 582 WP_015499991.1 shikimate kinase -
  OAN307_RS11965 (OAN307_c23590) aroB 2368469..2369581 (+) 1113 WP_015499992.1 3-dehydroquinate synthase -
  OAN307_RS11970 (OAN307_c23600) ssb 2369663..2370205 (-) 543 WP_015499993.1 single-stranded DNA-binding protein Machinery gene
  OAN307_RS11975 (OAN307_c23610) - 2370335..2370922 (+) 588 WP_044043623.1 lytic transglycosylase domain-containing protein -
  OAN307_RS11980 (OAN307_c23620) - 2371059..2373137 (-) 2079 WP_015499995.1 ABC transporter ATP-binding protein -
  OAN307_RS11985 (OAN307_c23630) - 2373142..2374596 (-) 1455 WP_015499996.1 ABC transporter permease -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 18476.06 Da        Isoelectric Point: 4.6876

>NTDB_id=57666 OAN307_RS11970 WP_015499993.1 2369663..2370205(-) (ssb) [Octadecabacter antarcticus 307]
MAGSLNKVMIIGNLGRDPEVRSFQNGGKVCNLRIATSENWKDKNTGERREKTEWHSVAIFQEGLVRVAEQYLKKGSTVYI
EGKLQTRKWQDQSGVDKYSTEIVLQGYDGVMTMIGGRSDGGSGGGGGGYGGGDQGGEYGGGDQGGGYGGGGSGGGYGGGD
QGGGQGGGGGSSDMDDEIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=57666 OAN307_RS11970 WP_015499993.1 2369663..2370205(-) (ssb) [Octadecabacter antarcticus 307]
ATGGCCGGTTCGCTTAACAAAGTCATGATTATCGGCAATCTGGGTCGCGACCCAGAAGTGCGCAGCTTTCAGAACGGCGG
CAAGGTGTGCAACCTGCGCATCGCCACGTCTGAAAACTGGAAAGACAAGAACACCGGTGAGCGGCGCGAGAAGACCGAAT
GGCATTCCGTTGCAATCTTTCAGGAGGGGTTGGTGCGCGTTGCGGAACAATACCTTAAAAAGGGCTCCACGGTTTATATC
GAGGGCAAGTTGCAGACCCGCAAATGGCAGGATCAATCCGGGGTCGACAAGTATTCGACCGAAATCGTGCTGCAGGGCTA
TGACGGGGTGATGACGATGATTGGCGGACGCAGTGATGGCGGGTCCGGCGGCGGCGGTGGCGGATATGGCGGTGGTGATC
AAGGCGGCGAATATGGTGGCGGCGATCAGGGCGGCGGTTACGGCGGTGGCGGCAGTGGTGGTGGTTACGGCGGCGGCGAT
CAAGGCGGCGGCCAAGGCGGTGGCGGCGGTAGCAGCGATATGGACGACGAAATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M9RDW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50

97.778

0.489
  ssb Glaesserella parasuis strain SC1401

46.524

100

0.483
  ssb Neisseria gonorrhoeae MS11

39.444

100

0.394
  ssb Neisseria meningitidis MC58

39.444

100

0.394

Multiple sequence alignment