Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KMZ14_RS14285 Genome accession   NZ_CP076603
Coordinates   2966066..2966647 (-) Length   193 a.a.
NCBI ID   WP_071320869.1    Uniprot ID   A0A1P8PGJ6
Organism   Acinetobacter schindleri strain MCDA01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2961066..2971647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ14_RS14260 (KMZ14_14205) - 2961070..2962377 (-) 1308 WP_005220638.1 FAD-dependent oxidoreductase -
  KMZ14_RS14265 (KMZ14_14210) - 2962791..2963669 (-) 879 WP_273798171.1 pirin family protein -
  KMZ14_RS14270 (KMZ14_14215) ahpC 2963995..2964558 (-) 564 WP_103800193.1 alkyl hydroperoxide reductase subunit C -
  KMZ14_RS14275 (KMZ14_14220) - 2964726..2965340 (-) 615 WP_163167498.1 TetR/AcrR family transcriptional regulator -
  KMZ14_RS14280 (KMZ14_14225) - 2965485..2965970 (+) 486 WP_273798172.1 hotdog fold domain-containing protein -
  KMZ14_RS14285 (KMZ14_14230) ssb 2966066..2966647 (-) 582 WP_071320869.1 single-stranded DNA-binding protein Machinery gene
  KMZ14_RS14290 (KMZ14_14235) - 2966699..2968063 (-) 1365 WP_005220623.1 MFS transporter -
  KMZ14_RS14295 (KMZ14_14240) - 2968218..2969306 (-) 1089 WP_071320870.1 DUF475 domain-containing protein -
  KMZ14_RS14300 (KMZ14_14245) tenA 2969529..2970197 (+) 669 WP_273798173.1 thiaminase II -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20976.78 Da        Isoelectric Point: 6.4820

>NTDB_id=576608 KMZ14_RS14285 WP_071320869.1 2966066..2966647(-) (ssb) [Acinetobacter schindleri strain MCDA01]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQSGQERYTTEIRGEQMQMLDSGRPQGEQSDNGGFAQPRFNNNQGGYGNNNAGQQGYNAPQQGGFNNAPAGG
NGYGNNNPSGFAPKSAPAPVAAPAADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=576608 KMZ14_RS14285 WP_071320869.1 2966066..2966647(-) (ssb) [Acinetobacter schindleri strain MCDA01]
ATGCGTGGTGTAAATAAGGTTATTTTAGTAGGTACTTTAGGTCGAGATCCTGAAACAAAAACTTTCCCGAATGGGGGTTC
TCTCACTCAATTCTCTATCGCGACCAGTGATTCGTGGACGGATAAGAACACTGGTGAGCGTAAAGAGCAAACAGAATGGC
ACCGCATTGTGCTGCATAACCGTTTAGGTGAAATTGCACAGCAGTATCTACGTAAAGGTTCTAAAGTCTATATCGAAGGT
TCACTACGTACCCGTCAGTGGACAGACCAAAGTGGTCAAGAGCGTTACACCACAGAAATCCGTGGTGAGCAGATGCAAAT
GCTGGATTCTGGCCGTCCTCAAGGTGAACAGTCAGACAATGGCGGTTTTGCACAGCCACGTTTCAACAATAACCAGGGCG
GCTATGGCAATAACAATGCTGGTCAACAAGGTTATAATGCACCACAGCAAGGTGGCTTCAATAATGCACCTGCGGGTGGC
AATGGCTATGGCAATAACAACCCAAGCGGTTTTGCGCCAAAATCTGCACCAGCTCCAGTTGCAGCGCCTGCAGCAGACCT
GGATGATGACTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1P8PGJ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.515

100

0.508
  ssb Vibrio cholerae strain A1552

44.67

100

0.456
  ssb Neisseria gonorrhoeae MS11

41.053

98.446

0.404
  ssb Neisseria meningitidis MC58

41.053

98.446

0.404