Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG77_RS01300 Genome accession   NZ_CP094159
Coordinates   283696..284745 (-) Length   349 a.a.
NCBI ID   WP_245109748.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0020     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 278696..289745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG77_RS01280 (MPG77_01280) rpsL 279838..280245 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG77_RS01285 (MPG77_01285) rpsG 280261..280728 (+) 468 WP_001254365.1 30S ribosomal protein S7 -
  MPG77_RS01290 (MPG77_01290) fusA 280740..282818 (+) 2079 WP_245109746.1 elongation factor G -
  MPG77_RS01295 (MPG77_01295) - 283342..283506 (+) 165 WP_000744175.1 hypothetical protein -
  MPG77_RS01300 (MPG77_01300) waaF 283696..284745 (-) 1050 WP_245109748.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG77_RS01305 (MPG77_01305) hisS 284807..286135 (+) 1329 WP_245109750.1 histidine--tRNA ligase -
  MPG77_RS01310 (MPG77_01310) asd 286122..287162 (+) 1041 WP_245109751.1 aspartate-semialdehyde dehydrogenase -
  MPG77_RS01315 (MPG77_01315) - 287590..288675 (+) 1086 WP_245109753.1 DUF874 family protein -
  MPG77_RS01320 (MPG77_01320) - 288921..289664 (-) 744 WP_180471648.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39584.40 Da        Isoelectric Point: 9.7383

>NTDB_id=576608 MPG77_RS01300 WP_245109748.1 283696..284745(-) (waaF) [Helicobacter pylori strain Hpfe0020]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSATLLEEGHEIYFFGAKEDIIVSEEILKLIKGLLKNPLSFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=576608 MPG77_RS01300 WP_245109748.1 283696..284745(-) (waaF) [Helicobacter pylori strain Hpfe0020]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATGACTTGTGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTTCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTAAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCACCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTACTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATATTATCGTTTCTGAAGAAATCTTAAAACTCATCAAAGGCTTATTAAAAAACCCCTTATCATTCAAT
AACGCTTACAATCTGTGCGGGAAGACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCACACAAACCCCCTTAATCGCTCTTTTTGGCCCCACCGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCC
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361