Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OA238_RS11935 Genome accession   NC_020908
Coordinates   2294713..2295273 (+) Length   186 a.a.
NCBI ID   WP_015495358.1    Uniprot ID   M9RJ89
Organism   Octadecabacter arcticus 238     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2289713..2300273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OA238_RS11915 (OA238_c21740) - 2290599..2292689 (+) 2091 WP_015495355.1 ABC transporter ATP-binding protein -
  OA238_RS11920 (OA238_c21750) - 2292827..2293297 (-) 471 WP_015495356.1 lytic transglycosylase domain-containing protein -
  OA238_RS30150 - 2293532..2294595 (+) 1064 WP_085982757.1 IS630 family transposase -
  OA238_RS11935 (OA238_c21780) ssb 2294713..2295273 (+) 561 WP_015495358.1 single-stranded DNA-binding protein Machinery gene
  OA238_RS11940 (OA238_c21790) aroB 2295368..2296507 (-) 1140 WP_015495359.1 3-dehydroquinate synthase -
  OA238_RS11945 (OA238_c21800) - 2296504..2297085 (-) 582 WP_015495360.1 shikimate kinase -
  OA238_RS32760 - 2297306..2297458 (+) 153 WP_085982804.1 hypothetical protein -
  OA238_RS11955 (OA238_c21810) - 2297458..2299029 (+) 1572 WP_015495361.1 hypothetical protein -
  OA238_RS11960 (OA238_c21820) - 2299026..2299967 (+) 942 WP_015495362.1 site-specific tyrosine recombinase XerD -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 19065.58 Da        Isoelectric Point: 4.6791

>NTDB_id=57658 OA238_RS11935 WP_015495358.1 2294713..2295273(+) (ssb) [Octadecabacter arcticus 238]
MAGSLNKVMIIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDKNTGERREKTEWHSVAIFQEGLVRVAEQYLKKGSTVYI
EGKLQTRKWQDQSGADKYSTEIVLQGYDGVMTMIGGRNDGGSGGGGGGYSGGDQGGGYGGGDQGGNSGGYGGGDQGGNSG
GYGGGDQGGSQGGGGGSSDMDDEIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=57658 OA238_RS11935 WP_015495358.1 2294713..2295273(+) (ssb) [Octadecabacter arcticus 238]
ATGGCCGGCTCGCTTAACAAAGTCATGATTATCGGCAATCTGGGTCGTGACCCGGAAGTGCGCAGCTTTCAGAACGGCGG
CAAGGTGTGCAACCTGCGCATCGCCACGTCTGAGACTTGGAAAGACAAAAACACCGGTGAGCGGCGCGAGAAGACCGAAT
GGCATTCCGTTGCGATCTTTCAAGAAGGGTTGGTGCGCGTGGCGGAACAATACCTCAAGAAGGGCTCAACCGTTTATATT
GAGGGGAAATTGCAGACCCGCAAATGGCAGGACCAATCCGGCGCTGACAAATATTCGACCGAGATCGTGTTGCAGGGCTA
TGACGGCGTCATGACGATGATTGGCGGTCGCAATGATGGTGGCTCCGGTGGCGGCGGCGGTGGATATTCCGGCGGCGATC
AGGGCGGCGGTTACGGCGGTGGCGACCAAGGCGGTAATAGTGGTGGTTACGGTGGCGGCGATCAGGGCGGTAATAGTGGT
GGTTACGGTGGTGGCGATCAGGGCGGTAGCCAAGGTGGCGGCGGTGGCAGCAGCGACATGGATGATGAAATCCCGTTCTA
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M9RJ89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.872

100

0.484
  ssb Vibrio cholerae strain A1552

48.901

97.849

0.478
  ssb Neisseria meningitidis MC58

39.344

98.387

0.387
  ssb Neisseria gonorrhoeae MS11

39.344

98.387

0.387

Multiple sequence alignment