Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   KMZ14_RS00860 Genome accession   NZ_CP076603
Coordinates   176490..177629 (-) Length   379 a.a.
NCBI ID   WP_004895280.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain MCDA01     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 171490..182629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ14_RS00835 (KMZ14_00835) - 172442..173050 (-) 609 WP_004814261.1 hypothetical protein -
  KMZ14_RS00840 (KMZ14_00840) - 173210..173590 (-) 381 WP_103801065.1 RcnB family protein -
  KMZ14_RS00845 (KMZ14_00845) - 173804..174349 (-) 546 WP_004814265.1 glutathione peroxidase -
  KMZ14_RS00850 (KMZ14_00850) - 174573..175484 (+) 912 WP_273798341.1 DMT family transporter -
  KMZ14_RS00855 (KMZ14_00855) - 175880..176449 (-) 570 WP_005220259.1 L-threonylcarbamoyladenylate synthase -
  KMZ14_RS00860 (KMZ14_00860) dprA 176490..177629 (-) 1140 WP_004895280.1 DNA-processing protein DprA Machinery gene
  KMZ14_RS00865 (KMZ14_00865) tsaP 177722..178876 (-) 1155 WP_004895279.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  KMZ14_RS00870 (KMZ14_00870) def 178997..179527 (+) 531 WP_005220256.1 peptide deformylase -
  KMZ14_RS00875 (KMZ14_00875) - 179620..180039 (+) 420 WP_273798342.1 DUF2946 family protein -
  KMZ14_RS00880 (KMZ14_00880) - 180111..182132 (+) 2022 WP_273798343.1 TonB-dependent copper receptor -

Sequence


Protein


Download         Length: 379 a.a.        Molecular weight: 42515.19 Da        Isoelectric Point: 6.1825

>NTDB_id=576571 KMZ14_RS00860 WP_004895280.1 176490..177629(-) (dprA) [Acinetobacter schindleri strain MCDA01]
MLNSLSTTQLDNIRLWYVVQHSLTSFYRLSEYYENLADAVQPDQVETWLKLGVHKNHIQRLQDFNCKDSQREFQFCLEQI
QKTCDFILLHNEADYPQQLSHYTDKPPILFGQGKADSLLQAQVAIVGSRKPSNHGRQMAYDFAYYLSEQGFYINSGLAQG
IDEAAHRAALQQHRTIAVMGTGLDQTYPATNQPLKEQIIAQGGTVITEFLPGTPPLQHHFPRRNRIVSGLSLGVIVAEAA
LKSGSLITAKLAAEQGKTVFAIPGHIYSENHKGCHQLIREGAILIDHPHQVVEDLALATQWQAAEQIYKAENSETELIEI
PAHLIPLYNQLDWIGQGLDQISIQLSQDVSTITAQLMELELLGFSTQQAGMFLRCRTGK

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=576571 KMZ14_RS00860 WP_004895280.1 176490..177629(-) (dprA) [Acinetobacter schindleri strain MCDA01]
ATGTTGAATTCGTTATCTACGACTCAACTGGACAACATTCGCTTATGGTATGTAGTCCAGCATTCCCTCACCAGTTTCTA
TCGCTTATCTGAATATTATGAAAATCTTGCTGATGCTGTTCAGCCGGATCAAGTCGAGACCTGGCTAAAACTAGGCGTTC
ATAAAAATCATATCCAGCGGCTTCAGGATTTCAATTGCAAAGATTCCCAGCGCGAGTTTCAGTTTTGTCTGGAGCAGATC
CAGAAAACTTGCGACTTTATTTTATTACATAATGAAGCGGATTATCCGCAGCAACTGAGTCACTACACCGATAAACCGCC
GATTTTATTTGGTCAGGGCAAGGCCGACAGTTTATTACAGGCACAAGTGGCAATTGTGGGCAGCCGCAAACCGAGCAATC
ACGGCCGTCAGATGGCTTATGATTTTGCGTATTACTTAAGTGAACAAGGTTTTTATATCAATAGTGGACTGGCGCAAGGC
ATTGATGAAGCGGCACATCGGGCAGCGCTGCAGCAGCATCGTACTATTGCAGTGATGGGCACGGGTCTGGATCAAACCTA
TCCGGCGACAAATCAGCCATTAAAAGAACAGATCATTGCCCAAGGCGGCACGGTGATTACAGAATTTTTGCCCGGTACTC
CACCTCTGCAACATCATTTTCCACGGCGTAACCGTATTGTCAGTGGACTGAGTCTGGGTGTTATTGTGGCTGAAGCTGCA
CTGAAAAGTGGCTCACTCATCACTGCAAAACTGGCTGCCGAACAAGGAAAAACCGTGTTTGCGATTCCTGGACATATCTA
CAGTGAAAACCACAAAGGCTGTCACCAGCTCATCCGCGAAGGCGCAATTCTGATTGATCATCCACACCAGGTGGTTGAAG
ATCTGGCATTAGCCACCCAATGGCAGGCAGCTGAACAAATTTATAAAGCAGAAAATAGTGAAACCGAATTGATCGAGATT
CCAGCACACCTGATTCCGCTCTACAACCAGCTCGACTGGATTGGACAAGGCCTAGATCAGATCAGCATTCAACTCAGCCA
GGATGTTTCCACAATCACAGCACAGTTGATGGAACTGGAATTACTCGGTTTCAGTACACAGCAAGCCGGTATGTTTCTAC
GTTGTCGTACAGGCAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

61.008

99.472

0.607

  dprA Acinetobacter baumannii D1279779

60.743

99.472

0.604

  dprA Acinetobacter baylyi ADP1

57.48

100

0.578