Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   KMZ14_RS00865 Genome accession   NZ_CP076603
Coordinates   177722..178876 (-) Length   384 a.a.
NCBI ID   WP_004895279.1    Uniprot ID   N9NLP0
Organism   Acinetobacter schindleri strain MCDA01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 172722..183876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ14_RS00840 (KMZ14_00840) - 173210..173590 (-) 381 WP_103801065.1 RcnB family protein -
  KMZ14_RS00845 (KMZ14_00845) - 173804..174349 (-) 546 WP_004814265.1 glutathione peroxidase -
  KMZ14_RS00850 (KMZ14_00850) - 174573..175484 (+) 912 WP_273798341.1 DMT family transporter -
  KMZ14_RS00855 (KMZ14_00855) - 175880..176449 (-) 570 WP_005220259.1 L-threonylcarbamoyladenylate synthase -
  KMZ14_RS00860 (KMZ14_00860) dprA 176490..177629 (-) 1140 WP_004895280.1 DNA-processing protein DprA Machinery gene
  KMZ14_RS00865 (KMZ14_00865) tsaP 177722..178876 (-) 1155 WP_004895279.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  KMZ14_RS00870 (KMZ14_00870) def 178997..179527 (+) 531 WP_005220256.1 peptide deformylase -
  KMZ14_RS00875 (KMZ14_00875) - 179620..180039 (+) 420 WP_273798342.1 DUF2946 family protein -
  KMZ14_RS00880 (KMZ14_00880) - 180111..182132 (+) 2022 WP_273798343.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42118.35 Da        Isoelectric Point: 9.0719

>NTDB_id=576572 KMZ14_RS00865 WP_004895279.1 177722..178876(-) (tsaP) [Acinetobacter schindleri strain MCDA01]
MKKVLKGMPSFSALGIKNQMLALAVCVGVGMGTISTTHAAPARNVNPPSLKASAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWAGNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCTGIINRYLGTNKLQPQVRIESLNNTIPVIPLAHIQQWLE
RYTIMAADSIEGTPYILGTADQRVLAGKGQKVYARGNGLEVGQRYAVYREAEPYILTDANGKKYTAALELQQVASGIAVR
GEGDITTLELTDSYNAEVRRGDRVLPEYDPMLPTLFYPVNAENNISGGQIIRVLGSIGTAARHSVVTIDRGIAHGVQSGH
VFSVNQQGEVVTDPKTKERVQLPGERIGNVMVFKTFDQFSYAYVLDSELPIKVGATIQPPLLDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=576572 KMZ14_RS00865 WP_004895279.1 177722..178876(-) (tsaP) [Acinetobacter schindleri strain MCDA01]
ATGAAAAAAGTTTTGAAGGGCATGCCATCTTTTAGTGCCTTGGGGATTAAAAATCAAATGCTCGCACTTGCAGTTTGTGT
GGGTGTTGGTATGGGGACAATTTCAACTACACATGCAGCGCCAGCTCGTAATGTCAATCCACCAAGCCTGAAAGCATCAG
CACCGAATGTCTATGTGGTAAAAAAAGGTGACACATTATGGGATATTTCCAAGCGTTTTCTTAAAAATCCGGTACGCTGG
CCAGAAATCTGGGCAGGCAATAAGCATGTGAAAAATCCACACTGGATTTTCCCGGGTGACCGTCTGCTAATGTGTGATTA
TCAGGGCCGCCCAATCATTGGTAAAGATGAAGGCGATGGTTGTACCGGTATCATCAACCGCTACCTTGGCACGAATAAGT
TACAGCCTCAGGTGCGTATCGAATCGCTCAACAATACCATTCCTGTTATTCCTTTAGCCCATATCCAGCAATGGCTAGAG
CGCTATACAATTATGGCAGCAGACTCTATTGAAGGCACTCCTTATATTCTGGGTACAGCTGATCAACGTGTACTGGCTGG
TAAAGGCCAGAAAGTTTATGCACGTGGCAATGGCCTGGAAGTGGGTCAACGCTATGCAGTATACCGCGAAGCTGAACCTT
ATATACTGACTGATGCCAATGGTAAAAAGTACACCGCTGCCCTAGAACTGCAACAGGTTGCTTCTGGTATCGCAGTCCGT
GGTGAAGGTGATATCACCACTCTGGAACTGACCGATAGCTATAATGCTGAAGTCCGTCGTGGTGACCGGGTACTACCAGA
ATATGATCCAATGCTGCCTACCCTGTTCTATCCAGTAAATGCGGAAAACAACATTTCAGGTGGTCAGATCATTCGTGTAT
TGGGTTCAATTGGTACAGCTGCGCGTCATAGTGTTGTCACCATTGACCGCGGCATAGCACATGGTGTTCAGTCTGGTCAT
GTGTTTAGTGTGAATCAGCAAGGTGAAGTCGTGACTGATCCAAAAACCAAAGAACGTGTACAGCTCCCGGGCGAACGTAT
TGGTAATGTCATGGTCTTCAAAACGTTTGATCAGTTCAGCTATGCCTATGTTCTAGACAGTGAATTGCCAATCAAAGTGG
GCGCTACCATTCAGCCACCGCTGCTGGACGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9NLP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

68.312

100

0.685