Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JNUCC24_RS19295 Genome accession   NZ_CP076532
Coordinates   3788046..3788588 (-) Length   180 a.a.
NCBI ID   WP_007497456.1    Uniprot ID   A0A5K1N7D0
Organism   Bacillus sp. JNUCC-24     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3783046..3793588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC24_RS19270 (JNUCC24_19270) - 3783320..3783928 (-) 609 WP_034622294.1 alpha/beta hydrolase -
  JNUCC24_RS19275 (JNUCC24_19275) - 3783925..3784896 (-) 972 WP_253207502.1 ring-cleaving dioxygenase -
  JNUCC24_RS19280 (JNUCC24_19280) opuFB 3785088..3786605 (-) 1518 WP_034622297.1 osmoprotectant update ABC transporter permease/substrate-binding subunit OpuFB -
  JNUCC24_RS19285 (JNUCC24_19285) - 3786598..3787563 (-) 966 WP_034622299.1 ABC transporter ATP-binding protein -
  JNUCC24_RS19290 (JNUCC24_19290) rpsR 3787766..3788005 (-) 240 WP_008359105.1 30S ribosomal protein S18 -
  JNUCC24_RS19295 (JNUCC24_19295) ssbA 3788046..3788588 (-) 543 WP_007497456.1 single-stranded DNA-binding protein SsbA Machinery gene
  JNUCC24_RS19300 (JNUCC24_19300) rpsF 3788625..3788912 (-) 288 WP_024424058.1 30S ribosomal protein S6 -
  JNUCC24_RS19305 (JNUCC24_19305) ychF 3789021..3790121 (-) 1101 WP_024424059.1 redox-regulated ATPase YchF -
  JNUCC24_RS19310 (JNUCC24_19310) - 3790338..3790544 (-) 207 WP_008347561.1 DUF951 domain-containing protein -
  JNUCC24_RS19315 (JNUCC24_19315) - 3790840..3792159 (+) 1320 WP_185854023.1 hydrolase -
  JNUCC24_RS19320 (JNUCC24_19320) - 3792175..3792585 (+) 411 WP_024424061.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19605.15 Da        Isoelectric Point: 4.6109

>NTDB_id=576264 JNUCC24_RS19295 WP_007497456.1 3788046..3788588(-) (ssbA) [Bacillus sp. JNUCC-24]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=576264 JNUCC24_RS19295 WP_007497456.1 3788046..3788588(-) (ssbA) [Bacillus sp. JNUCC-24]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAACAACCAAAATCGTAATCAGGGAAATAGCTTTAAT
GATGACCCATTTGCGAACGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1N7D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

85.556

100

0.856
  ssb Latilactobacillus sakei subsp. sakei 23K

55.376

100

0.572
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.889

0.378
  ssb Glaesserella parasuis strain SC1401

35.714

100

0.361