Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   KPF74_RS07130 Genome accession   NZ_CP076505
Coordinates   1400769..1402181 (-) Length   470 a.a.
NCBI ID   WP_002862130.1    Uniprot ID   A0A1E7P8U9
Organism   Campylobacter jejuni strain R16.4752     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1395769..1407181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF74_RS07105 (KPF74_07105) - 1396093..1396857 (+) 765 WP_002851426.1 TSUP family transporter -
  KPF74_RS07110 (KPF74_07110) ctsF 1396850..1398031 (-) 1182 WP_216170232.1 type II secretion system F family protein Machinery gene
  KPF74_RS07115 (KPF74_07115) ctsE 1398028..1399587 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  KPF74_RS07120 (KPF74_07120) ctsX 1399577..1400164 (-) 588 WP_002851370.1 membrane protein Machinery gene
  KPF74_RS07125 (KPF74_07125) ctsP 1400168..1400776 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  KPF74_RS07130 (KPF74_07130) ctsD 1400769..1402181 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  KPF74_RS07135 (KPF74_07135) ctsR 1402159..1402470 (-) 312 WP_015016496.1 hypothetical protein Machinery gene
  KPF74_RS07140 (KPF74_07140) nifJ 1402494..1406054 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  KPF74_RS07145 (KPF74_07145) - 1406147..1406788 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 53055.57 Da        Isoelectric Point: 6.6184

>NTDB_id=575891 KPF74_RS07130 WP_002862130.1 1400769..1402181(-) (ctsD) [Campylobacter jejuni strain R16.4752]
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLETLQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=575891 KPF74_RS07130 WP_002862130.1 1400769..1402181(-) (ctsD) [Campylobacter jejuni strain R16.4752]
ATGATAAGATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAACGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTCAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAACATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTGGACGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGATGCAGAAGACAACATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAGCCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCACAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGCGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGTACTGAAAATGGGACTACTGTTAGTGAAAGTTATAATAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTTAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGCGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATCGTTTTTATTATCACTCCAAGTATAGTAG
ATAGCGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(281-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E7P8U9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

99.574

100

0.996