Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   KPF74_RS07110 Genome accession   NZ_CP076505
Coordinates   1396850..1398031 (-) Length   393 a.a.
NCBI ID   WP_216170232.1    Uniprot ID   -
Organism   Campylobacter jejuni strain R16.4752     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1391850..1403031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF74_RS07080 (KPF74_07080) - 1392393..1392734 (+) 342 WP_052782637.1 hypothetical protein -
  KPF74_RS07085 (KPF74_07085) flgM 1392797..1392994 (+) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  KPF74_RS07090 (KPF74_07090) - 1393037..1393471 (+) 435 WP_002779263.1 flagellar protein FlgN -
  KPF74_RS07095 (KPF74_07095) flgK 1393481..1395307 (+) 1827 WP_002851396.1 flagellar hook-associated protein FlgK -
  KPF74_RS07100 (KPF74_07100) - 1395324..1396089 (+) 766 Protein_1390 TIGR02757 family protein -
  KPF74_RS07105 (KPF74_07105) - 1396093..1396857 (+) 765 WP_002851426.1 TSUP family transporter -
  KPF74_RS07110 (KPF74_07110) ctsF 1396850..1398031 (-) 1182 WP_216170232.1 type II secretion system F family protein Machinery gene
  KPF74_RS07115 (KPF74_07115) ctsE 1398028..1399587 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  KPF74_RS07120 (KPF74_07120) ctsX 1399577..1400164 (-) 588 WP_002851370.1 membrane protein Machinery gene
  KPF74_RS07125 (KPF74_07125) ctsP 1400168..1400776 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  KPF74_RS07130 (KPF74_07130) ctsD 1400769..1402181 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  KPF74_RS07135 (KPF74_07135) ctsR 1402159..1402470 (-) 312 WP_015016496.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45780.35 Da        Isoelectric Point: 9.0938

>NTDB_id=575887 KPF74_RS07110 WP_216170232.1 1396850..1398031(-) (ctsF) [Campylobacter jejuni strain R16.4752]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYFMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKSFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=575887 KPF74_RS07110 WP_216170232.1 1396850..1398031(-) (ctsF) [Campylobacter jejuni strain R16.4752]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATTTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGTCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987