Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   KPF74_RS07125 Genome accession   NZ_CP076505
Coordinates   1400168..1400776 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni strain R16.4752     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1395168..1405776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF74_RS07100 (KPF74_07100) - 1395324..1396089 (+) 766 Protein_1390 TIGR02757 family protein -
  KPF74_RS07105 (KPF74_07105) - 1396093..1396857 (+) 765 WP_002851426.1 TSUP family transporter -
  KPF74_RS07110 (KPF74_07110) ctsF 1396850..1398031 (-) 1182 WP_216170232.1 type II secretion system F family protein Machinery gene
  KPF74_RS07115 (KPF74_07115) ctsE 1398028..1399587 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  KPF74_RS07120 (KPF74_07120) ctsX 1399577..1400164 (-) 588 WP_002851370.1 membrane protein Machinery gene
  KPF74_RS07125 (KPF74_07125) ctsP 1400168..1400776 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  KPF74_RS07130 (KPF74_07130) ctsD 1400769..1402181 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  KPF74_RS07135 (KPF74_07135) ctsR 1402159..1402470 (-) 312 WP_015016496.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=575890 KPF74_RS07125 WP_002851464.1 1400168..1400776(-) (ctsP) [Campylobacter jejuni strain R16.4752]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=575890 KPF74_RS07125 WP_002851464.1 1400168..1400776(-) (ctsP) [Campylobacter jejuni strain R16.4752]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995