Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   KPF74_RS07135 Genome accession   NZ_CP076505
Coordinates   1402159..1402470 (-) Length   103 a.a.
NCBI ID   WP_015016496.1    Uniprot ID   A0A3X8SVA4
Organism   Campylobacter jejuni strain R16.4752     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1397159..1407470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF74_RS07115 (KPF74_07115) ctsE 1398028..1399587 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  KPF74_RS07120 (KPF74_07120) ctsX 1399577..1400164 (-) 588 WP_002851370.1 membrane protein Machinery gene
  KPF74_RS07125 (KPF74_07125) ctsP 1400168..1400776 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  KPF74_RS07130 (KPF74_07130) ctsD 1400769..1402181 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  KPF74_RS07135 (KPF74_07135) ctsR 1402159..1402470 (-) 312 WP_015016496.1 hypothetical protein Machinery gene
  KPF74_RS07140 (KPF74_07140) nifJ 1402494..1406054 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  KPF74_RS07145 (KPF74_07145) - 1406147..1406788 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12457.35 Da        Isoelectric Point: 5.8722

>NTDB_id=575892 KPF74_RS07135 WP_015016496.1 1402159..1402470(-) (ctsR) [Campylobacter jejuni strain R16.4752]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIILDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=575892 KPF74_RS07135 WP_015016496.1 1402159..1402470(-) (ctsR) [Campylobacter jejuni strain R16.4752]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATACTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3X8SVA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99