Detailed information
Bioinformatically predicted
Overview
| Name | comEA/comE1 | Type | Machinery gene |
| Locus tag | D648_RS01795 | Genome accession | NC_020834 |
| Coordinates | 349342..349680 (-) | Length | 112 a.a. |
| NCBI ID | WP_006251644.1 | Uniprot ID | A0A248ZWT2 |
| Organism | Mannheimia haemolytica USDA-ARS-USMARC-185 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 344342..354680
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D648_RS01780 (D648_21990) | - | 344344..345813 (-) | 1470 | WP_006250002.1 | HsdM family class I SAM-dependent methyltransferase | - |
| D648_RS01785 (D648_21980) | hsdR | 345861..348212 (-) | 2352 | WP_006250003.1 | EcoAI/FtnUII family type I restriction enzme subunit R | - |
| D648_RS01790 (D648_21970) | asd | 348284..349177 (-) | 894 | WP_006250004.1 | archaetidylserine decarboxylase | - |
| D648_RS01795 (D648_21960) | comEA/comE1 | 349342..349680 (-) | 339 | WP_006251644.1 | ComEA family DNA-binding protein | Machinery gene |
| D648_RS01800 (D648_21950) | - | 349973..351292 (+) | 1320 | WP_006253337.1 | LysM-like peptidoglycan-binding domain-containing protein | - |
| D648_RS01805 (D648_21940) | - | 351356..351772 (+) | 417 | WP_006250330.1 | MliC family protein | - |
| D648_RS01810 (D648_21930) | waaF | 351883..352920 (+) | 1038 | WP_006250331.1 | lipopolysaccharide heptosyltransferase II | - |
| D648_RS01815 (D648_21920) | rfaC | 352987..353946 (+) | 960 | WP_006250332.1 | lipopolysaccharide heptosyltransferase RfaC | - |
| D648_RS01820 (D648_21910) | rpsL | 354067..354441 (+) | 375 | WP_005543325.1 | 30S ribosomal protein S12 | - |
Sequence
Protein
Download Length: 112 a.a. Molecular weight: 12111.91 Da Isoelectric Point: 10.0993
>NTDB_id=57585 D648_RS01795 WP_006251644.1 349342..349680(-) (comEA/comE1) [Mannheimia haemolytica USDA-ARS-USMARC-185]
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQKKAQAIVDYRT
KNGNFKNIEQLAEVSGIGQATVEKNRANIILE
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQKKAQAIVDYRT
KNGNFKNIEQLAEVSGIGQATVEKNRANIILE
Nucleotide
Download Length: 339 bp
>NTDB_id=57585 D648_RS01795 WP_006251644.1 349342..349680(-) (comEA/comE1) [Mannheimia haemolytica USDA-ARS-USMARC-185]
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCTAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAAAAAAGCTCAAGCGATTGTCGATTACCGTACT
AAAAACGGCAATTTTAAAAACATTGAGCAACTTGCTGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAAAAAAATCGAGC
CAATATTATTTTAGAATAA
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCTAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAAAAAAGCTCAAGCGATTGTCGATTACCGTACT
AAAAACGGCAATTTTAAAAACATTGAGCAACTTGCTGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAAAAAAATCGAGC
CAATATTATTTTAGAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
59.292 |
100 |
0.598 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
52.747 |
81.25 |
0.429 |
| comEA | Vibrio cholerae C6706 |
54.651 |
76.786 |
0.42 |
| comEA | Vibrio cholerae strain A1552 |
54.651 |
76.786 |
0.42 |