Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPF99_RS00455 Genome accession   NZ_CP094130
Coordinates   87994..88545 (-) Length   183 a.a.
NCBI ID   WP_245058896.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe053     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 82994..93545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF99_RS00430 (MPF99_00430) ruvC 83212..83694 (-) 483 WP_001221181.1 crossover junction endodeoxyribonuclease RuvC -
  MPF99_RS00435 (MPF99_00435) - 83823..84548 (+) 726 WP_245058892.1 NYN domain-containing protein -
  MPF99_RS07820 - 84696..84818 (-) 123 WP_021306667.1 hypothetical protein -
  MPF99_RS00440 (MPF99_00440) - 84897..85196 (-) 300 WP_245059619.1 hypothetical protein -
  MPF99_RS00445 (MPF99_00445) - 85156..87667 (-) 2512 Protein_89 DUF3519 domain-containing protein -
  MPF99_RS00450 (MPF99_00450) - 87729..87980 (+) 252 WP_245058894.1 hypothetical protein -
  MPF99_RS00455 (MPF99_00455) ruvA 87994..88545 (-) 552 WP_245058896.1 Holliday junction branch migration protein RuvA Machinery gene
  MPF99_RS00460 (MPF99_00460) - 88571..90415 (-) 1845 WP_245058898.1 FapA family protein -
  MPF99_RS00465 (MPF99_00465) murJ 90508..91968 (+) 1461 WP_245058899.1 murein biosynthesis integral membrane protein MurJ -
  MPF99_RS00470 (MPF99_00470) cysS 91969..93366 (+) 1398 WP_245058901.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20111.67 Da        Isoelectric Point: 9.4311

>NTDB_id=575672 MPF99_RS00455 WP_245058896.1 87994..88545(-) (ruvA) [Helicobacter pylori strain Hpfe053]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPARNEVFLALESLGFKSAEINKV
LKTLKSHLSTEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=575672 MPF99_RS00455 WP_245058896.1 87994..88545(-) (ruvA) [Helicobacter pylori strain Hpfe053]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAGCATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAACTTGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACTAGCCCTGCACGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAATCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(139-181)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

94.536

100

0.945
  ruvA Bacillus subtilis subsp. subtilis str. 168

32.836

100

0.361
  ruvA Streptococcus pneumoniae TIGR4

33.846

100

0.361
  ruvA Streptococcus pneumoniae R6

33.846

100

0.361
  ruvA Streptococcus pneumoniae D39

33.846

100

0.361