Detailed information
Bioinformatically predicted
Overview
| Name | comEA/comE1 | Type | Machinery gene |
| Locus tag | D650_RS02145 | Genome accession | NC_020833 |
| Coordinates | 420672..421010 (-) | Length | 112 a.a. |
| NCBI ID | WP_006251644.1 | Uniprot ID | A0A248ZWT2 |
| Organism | Mannheimia haemolytica USDA-ARS-USMARC-183 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 415672..426010
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D650_RS02130 (D650_4190) | - | 415674..417143 (-) | 1470 | WP_006250002.1 | HsdM family class I SAM-dependent methyltransferase | - |
| D650_RS02135 (D650_4200) | hsdR | 417191..419542 (-) | 2352 | WP_006250003.1 | EcoAI/FtnUII family type I restriction enzme subunit R | - |
| D650_RS02140 (D650_4210) | asd | 419614..420507 (-) | 894 | WP_006250004.1 | archaetidylserine decarboxylase | - |
| D650_RS02145 (D650_4220) | comEA/comE1 | 420672..421010 (-) | 339 | WP_006251644.1 | ComEA family DNA-binding protein | Machinery gene |
| D650_RS02150 (D650_4230) | - | 421303..422622 (+) | 1320 | WP_006253337.1 | LysM-like peptidoglycan-binding domain-containing protein | - |
| D650_RS02155 (D650_4240) | - | 422686..423102 (+) | 417 | WP_006250330.1 | MliC family protein | - |
| D650_RS02160 (D650_4250) | waaF | 423213..424250 (+) | 1038 | WP_006250331.1 | lipopolysaccharide heptosyltransferase II | - |
| D650_RS02165 (D650_4260) | rfaC | 424317..425276 (+) | 960 | WP_006250332.1 | lipopolysaccharide heptosyltransferase RfaC | - |
| D650_RS02170 (D650_4270) | rpsL | 425397..425771 (+) | 375 | WP_021265415.1 | 30S ribosomal protein S12 | - |
Sequence
Protein
Download Length: 112 a.a. Molecular weight: 12111.91 Da Isoelectric Point: 10.0993
>NTDB_id=57565 D650_RS02145 WP_006251644.1 420672..421010(-) (comEA/comE1) [Mannheimia haemolytica USDA-ARS-USMARC-183]
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQKKAQAIVDYRT
KNGNFKNIEQLAEVSGIGQATVEKNRANIILE
MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQITNANAVNINTASAAELQDKLVGIGQKKAQAIVDYRT
KNGNFKNIEQLAEVSGIGQATVEKNRANIILE
Nucleotide
Download Length: 339 bp
>NTDB_id=57565 D650_RS02145 WP_006251644.1 420672..421010(-) (comEA/comE1) [Mannheimia haemolytica USDA-ARS-USMARC-183]
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCTAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAAAAAAGCTCAAGCGATTGTCGATTACCGTACT
AAAAACGGCAATTTTAAAAACATTGAGCAACTTGCTGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAAAAAAATCGAGC
CAATATTATTTTAGAATAA
ATGAAGAAAATCAAACAACTTGGTCTAACATTCTTGTTTGGCTTAAATGCAATGGCTTTTGCCCAAACACCGCCAACTAC
AATGCCTGTTGAACAAAATGCAGTCACTCAACCCGTACAGCAAACACAAATCACCAACGCTAATGCGGTAAATATCAATA
CTGCTAGTGCTGCTGAATTGCAAGACAAGCTAGTGGGAATTGGGCAGAAAAAAGCTCAAGCGATTGTCGATTACCGTACT
AAAAACGGCAATTTTAAAAACATTGAGCAACTTGCTGAAGTCTCCGGAATTGGGCAAGCAACGGTAGAAAAAAATCGAGC
CAATATTATTTTAGAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
59.292 |
100 |
0.598 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
52.747 |
81.25 |
0.429 |
| comEA | Vibrio cholerae C6706 |
54.651 |
76.786 |
0.42 |
| comEA | Vibrio cholerae strain A1552 |
54.651 |
76.786 |
0.42 |