Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I653_RS19890 Genome accession   NC_020832
Coordinates   4005221..4005739 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis subsp. subtilis str. BAB-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4000221..4010739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I653_RS19860 (I653_20095) yyaJ 4000729..4002084 (+) 1356 WP_015483979.1 MFS transporter -
  I653_RS19865 (I653_20100) maa 4002118..4002672 (-) 555 WP_015385213.1 maltose acetyltransferase domain-containing protein -
  I653_RS19870 (I653_20105) yyaH 4002688..4003068 (-) 381 WP_015483980.1 VOC family protein -
  I653_RS19875 (I653_20110) ccpB 4003124..4004056 (-) 933 WP_015385215.1 transcriptional regulator CcpB -
  I653_RS19880 (I653_20115) xth 4004115..4004873 (-) 759 WP_015385216.1 exodeoxyribonuclease III -
  I653_RS19885 (I653_20120) rpsR 4004938..4005177 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  I653_RS19890 (I653_20125) ssbA 4005221..4005739 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  I653_RS19895 (I653_20130) rpsF 4005780..4006067 (-) 288 WP_003236622.1 30S ribosomal protein S6 -
  I653_RS19900 (I653_20135) ychF 4006178..4007278 (-) 1101 WP_015483981.1 redox-regulated ATPase YchF -
  I653_RS19905 (I653_20140) yyaE 4007405..4009408 (-) 2004 WP_015385219.1 molybdopterin-dependent oxidoreductase -
  I653_RS19910 (I653_20145) yyzM 4009459..4009665 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=57558 I653_RS19890 WP_003219228.1 4005221..4005739(-) (ssbA) [Bacillus subtilis subsp. subtilis str. BAB-1]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=57558 I653_RS19890 WP_003219228.1 4005221..4005739(-) (ssbA) [Bacillus subtilis subsp. subtilis str. BAB-1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAACGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment