Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPG06_RS02910 Genome accession   NZ_CP094126
Coordinates   607607..608158 (+) Length   183 a.a.
NCBI ID   WP_245058197.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe056     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 602607..613158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG06_RS02895 (MPG06_02895) cysS 602787..604184 (-) 1398 WP_245058193.1 cysteine--tRNA ligase -
  MPG06_RS02900 (MPG06_02900) murJ 604185..605645 (-) 1461 WP_245047870.1 murein biosynthesis integral membrane protein MurJ -
  MPG06_RS02905 (MPG06_02905) - 605738..607582 (+) 1845 WP_245058195.1 FapA family protein -
  MPG06_RS02910 (MPG06_02910) ruvA 607607..608158 (+) 552 WP_245058197.1 Holliday junction branch migration protein RuvA Machinery gene
  MPG06_RS02915 (MPG06_02915) - 608179..608424 (-) 246 WP_245058199.1 hypothetical protein -
  MPG06_RS02920 (MPG06_02920) - 608486..610478 (+) 1993 Protein_559 DUF3519 domain-containing protein -
  MPG06_RS08000 - 610561..610929 (+) 369 WP_342370404.1 PBECR2 nuclease fold domain-containing protein -
  MPG06_RS02925 (MPG06_02925) - 611325..612050 (-) 726 WP_000646754.1 NYN domain-containing protein -
  MPG06_RS02930 (MPG06_02930) ruvC 612181..612663 (+) 483 WP_245021582.1 crossover junction endodeoxyribonuclease RuvC -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20123.74 Da        Isoelectric Point: 8.0466

>NTDB_id=575557 MPG06_RS02910 WP_245058197.1 607607..608158(+) (ruvA) [Helicobacter pylori strain Hpfe056]
MIVGLIGVVEKISVLEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETGPACNEVFLALESLGFKSTEINKV
LKTLKPHLSTEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=575557 MPG06_RS02910 WP_245058197.1 607607..608158(+) (ruvA) [Helicobacter pylori strain Hpfe056]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCCGTTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTTCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAACTGGCCCTGCGTGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGTTTTAAAAGCACTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(141-181)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

92.896

100

0.929
  ruvA Streptococcus pneumoniae R6

34.359

100

0.366
  ruvA Streptococcus pneumoniae D39

34.359

100

0.366
  ruvA Bacillus subtilis subsp. subtilis str. 168

32.836

100

0.361
  ruvA Streptococcus pneumoniae TIGR4

33.846

100

0.361