Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPG25_RS02830 Genome accession   NZ_CP094121
Coordinates   593300..593851 (+) Length   183 a.a.
NCBI ID   WP_050828705.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe059     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 588300..598851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG25_RS02815 (MPG25_02815) cysS 588478..589875 (-) 1398 WP_245019019.1 cysteine--tRNA ligase -
  MPG25_RS02820 (MPG25_02820) murJ 589876..591336 (-) 1461 WP_245019020.1 murein biosynthesis integral membrane protein MurJ -
  MPG25_RS02825 (MPG25_02825) - 591429..593273 (+) 1845 WP_245019021.1 FapA family protein -
  MPG25_RS02830 (MPG25_02830) ruvA 593300..593851 (+) 552 WP_050828705.1 Holliday junction branch migration protein RuvA Machinery gene
  MPG25_RS02835 (MPG25_02835) - 593902..596370 (+) 2469 WP_245019022.1 DUF3519 domain-containing protein -
  MPG25_RS02840 (MPG25_02840) - 596385..596756 (+) 372 Protein_548 hypothetical protein -
  MPG25_RS02845 (MPG25_02845) - 596781..597917 (-) 1137 WP_000462009.1 NAD-binding protein -
  MPG25_RS02850 (MPG25_02850) rpmB 598067..598255 (-) 189 WP_001119000.1 50S ribosomal protein L28 -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20176.79 Da        Isoelectric Point: 9.4311

>NTDB_id=575438 MPG25_RS02830 WP_050828705.1 593300..593851(+) (ruvA) [Helicobacter pylori strain Hpfe059]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPARNEVFLALESLGFKSAEINKV
LKTLKPHLSTEVAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=575438 MPG25_RS02830 WP_050828705.1 593300..593851(+) (ruvA) [Helicobacter pylori strain Hpfe059]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGGACTTCTGCTTTGCTTCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTCATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACTAGTCCTGCGCGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAGTAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(139-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

93.989

100

0.94
  ruvA Bacillus subtilis subsp. subtilis str. 168

32.836

100

0.361
  ruvA Streptococcus pneumoniae TIGR4

33.846

100

0.361
  ruvA Streptococcus pneumoniae R6

33.846

100

0.361
  ruvA Streptococcus pneumoniae D39

33.846

100

0.361