Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KO461_RS02465 Genome accession   NZ_CP076449
Coordinates   476049..476534 (-) Length   161 a.a.
NCBI ID   WP_014702365.1    Uniprot ID   A0A142G044
Organism   Aggregatibacter actinomycetemcomitans strain CU1000N     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 471049..481534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KO461_RS02445 - 471923..472156 (+) 234 WP_005564700.1 hypothetical protein -
  KO461_RS02450 - 472553..472741 (-) 189 WP_005543949.1 hypothetical protein -
  KO461_RS02455 (KO461_02445) - 472908..475079 (+) 2172 WP_205764650.1 YecA family protein -
  KO461_RS02460 (KO461_02450) - 475293..475859 (+) 567 WP_005564698.1 efflux RND transporter permease subunit -
  KO461_RS02465 (KO461_02455) ssb 476049..476534 (-) 486 WP_014702365.1 single-stranded DNA-binding protein Machinery gene
  KO461_RS02470 (KO461_02460) uvrA 476704..479535 (+) 2832 WP_205764651.1 excinuclease ABC subunit UvrA -
  KO461_RS02475 (KO461_02465) - 479613..479987 (+) 375 WP_033002259.1 transposase -
  KO461_RS02480 (KO461_02470) - 480002..480745 (+) 744 WP_267130250.1 IS3 family transposase -
  KO461_RS11530 (KO461_02475) - 480709..480789 (+) 81 WP_080997137.1 IS3 family transposase -
  KO461_RS02485 (KO461_02480) - 480866..481276 (-) 411 WP_005589530.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17972.83 Da        Isoelectric Point: 5.3111

>NTDB_id=575417 KO461_RS02465 WP_014702365.1 476049..476534(-) (ssb) [Aggregatibacter actinomycetemcomitans strain CU1000N]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANITVATSESWNDKNTGERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRADRQSGGNYAPAAVAQPSYPSQQQSAPRSAPASKPTAEAPMDNFDDDIP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=575417 KO461_RS02465 WP_014702365.1 476049..476534(-) (ssb) [Aggregatibacter actinomycetemcomitans strain CU1000N]
ATGGCTGGAGTAAATAAAGTGATTATCGTCGGTAATTTGGGTAACGATCCTGAAATCCGCACCATGCCGAATGGCGAAGC
CGTTGCCAACATTACCGTTGCCACCAGTGAAAGCTGGAATGACAAAAATACCGGCGAACGCCGCGAAGTCACTGAATGGC
ACCGTATCGTATTTTATCGCCGCCAGGCGGAAGTGGCGGGGGAATACCTGCGTAAAGGCTCGAAAGTCTATGTCGAAGGA
CGCTTAAGAACCCGTAAATGGCAGGATCAAAACGGTCAAGATCGCTACACCACCGAAATCCAAGGCGACGTTTTACAAAT
GTTAGACAGCCGTGCCGATCGCCAATCCGGCGGAAACTACGCACCGGCTGCAGTTGCCCAACCAAGTTATCCAAGCCAAC
AACAAAGCGCCCCACGCAGCGCGCCGGCAAGTAAACCTACCGCCGAAGCGCCGATGGATAATTTTGATGATGATATTCCG
TTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142G044

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

70.556

100

0.789
  ssb Vibrio cholerae strain A1552

57.803

100

0.621
  ssb Neisseria gonorrhoeae MS11

47.126

100

0.509
  ssb Neisseria meningitidis MC58

45.763

100

0.503