Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KMZ15_RS00810 Genome accession   NZ_CP076444
Coordinates   237207..237716 (-) Length   169 a.a.
NCBI ID   WP_223693161.1    Uniprot ID   -
Organism   Mycoavidus sp. HKI     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 232207..242716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ15_RS00780 (KMZ15_00770) - 232780..233571 (-) 792 WP_223693156.1 IclR family transcriptional regulator -
  KMZ15_RS00785 (KMZ15_00775) - 233671..234723 (-) 1053 WP_223693157.1 quinone-dependent dihydroorotate dehydrogenase -
  KMZ15_RS00790 (KMZ15_00780) - 234786..235331 (+) 546 WP_223693159.1 NUDIX hydrolase -
  KMZ15_RS00795 (KMZ15_00785) aat 235430..235975 (+) 546 Protein_152 leucyl/phenylalanyl-tRNA--protein transferase -
  KMZ15_RS00800 (KMZ15_00790) - 235990..236865 (-) 876 WP_223692007.1 IS982 family transposase -
  KMZ15_RS00805 (KMZ15_00795) - 236995..237210 (+) 216 Protein_154 leucyl/phenylalanyl-tRNA--protein transferase -
  KMZ15_RS00810 (KMZ15_00800) ssb 237207..237716 (-) 510 WP_223693161.1 single-stranded DNA-binding protein Machinery gene
  KMZ15_RS00815 (KMZ15_00805) - 237716..238912 (-) 1197 WP_223693163.1 MFS transporter -
  KMZ15_RS00820 (KMZ15_00810) uvrA 239030..241939 (+) 2910 WP_223693166.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18567.67 Da        Isoelectric Point: 5.7989

>NTDB_id=575291 KMZ15_RS00810 WP_223693161.1 237207..237716(-) (ssb) [Mycoavidus sp. HKI]
MASVNKVILVGNLGADPEIRALPNGDPVANIRLATTERYKDKASGEMRELTEWHRVVFFNRLAEVIRDYLKKGSSVYIEG
RIRTRKWQDQSGQDRYSTEIMGDQMQMLGGRSTGTVSMDQEGYGQGSAQPPARTSNFTPANAAANRPSSAPAHAPASSGF
DEMDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=575291 KMZ15_RS00810 WP_223693161.1 237207..237716(-) (ssb) [Mycoavidus sp. HKI]
ATGGCATCCGTGAATAAAGTTATACTGGTTGGCAATCTTGGCGCCGATCCTGAAATCCGCGCTTTACCTAATGGCGATCC
GGTAGCCAATATTCGTCTGGCTACTACGGAACGTTACAAAGACAAAGCAAGTGGCGAAATGAGAGAACTGACTGAATGGC
ATCGCGTCGTTTTCTTTAACCGGCTAGCAGAGGTAATACGGGACTACCTTAAGAAGGGTTCATCCGTCTATATTGAAGGG
CGGATTCGCACTCGCAAATGGCAAGACCAAAGCGGGCAGGATCGCTATTCAACTGAAATCATGGGTGACCAAATGCAAAT
GCTCGGCGGGCGTAGCACTGGCACAGTTTCAATGGATCAAGAAGGCTACGGGCAAGGGTCCGCTCAACCCCCTGCGCGCA
CAAGCAATTTCACTCCTGCAAACGCAGCGGCAAACCGCCCTAGCAGTGCGCCCGCCCATGCGCCAGCAAGTAGTGGATTT
GATGAAATGGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.459

100

0.568
  ssb Vibrio cholerae strain A1552

51.667

100

0.55
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.473
  ssb Neisseria meningitidis MC58

44.571

100

0.462