Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPG48_RS02945 Genome accession   NZ_CP094113
Coordinates   615935..616486 (+) Length   183 a.a.
NCBI ID   WP_073469640.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe069     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 610935..621486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG48_RS02930 (MPG48_02930) cysS 611114..612511 (-) 1398 WP_180616882.1 cysteine--tRNA ligase -
  MPG48_RS02935 (MPG48_02935) murJ 612512..613972 (-) 1461 WP_245065747.1 murein biosynthesis integral membrane protein MurJ -
  MPG48_RS02940 (MPG48_02940) - 614065..615909 (+) 1845 WP_245065749.1 hypothetical protein -
  MPG48_RS02945 (MPG48_02945) ruvA 615935..616486 (+) 552 WP_073469640.1 Holliday junction branch migration protein RuvA Machinery gene
  MPG48_RS02950 (MPG48_02950) - 616576..616794 (-) 219 WP_245065751.1 hypothetical protein -
  MPG48_RS02955 (MPG48_02955) - 616793..619246 (+) 2454 WP_245065956.1 DUF3519 domain-containing protein -
  MPG48_RS02960 (MPG48_02960) - 619413..620339 (+) 927 Protein_568 DUF3519 domain-containing protein -
  MPG48_RS02965 (MPG48_02965) - 620341..620706 (+) 366 WP_245065753.1 hypothetical protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20148.73 Da        Isoelectric Point: 9.4311

>NTDB_id=575201 MPG48_RS02945 WP_073469640.1 615935..616486(+) (ruvA) [Helicobacter pylori strain Hpfe069]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETGPARNEVFLALESLGFKSAEINKV
LKTLKPHLSTETAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=575201 MPG48_RS02945 WP_073469640.1 615935..616486(+) (ruvA) [Helicobacter pylori strain Hpfe069]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTAGATTTGATTGGTTTTTTCATTCAAG
ATGAAACTGGCCCTGCACGCAATGAAGTCTTTTTAGCCCTGGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAACAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(139-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

93.989

100

0.94
  ruvA Streptococcus pneumoniae R6

34.359

100

0.366
  ruvA Streptococcus pneumoniae D39

34.359

100

0.366
  ruvA Bacillus subtilis subsp. subtilis str. 168

32.836

100

0.361
  ruvA Streptococcus pneumoniae TIGR4

33.846

100

0.361