Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ZHX2020_RS10805 Genome accession   NZ_CP076409
Coordinates   2014817..2015335 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus sp. ZHX3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2009817..2020335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ZHX2020_RS10780 (ZHX2020_10730) - 2010077..2011105 (+) 1029 WP_014481504.1 AAA family ATPase -
  ZHX2020_RS10785 (ZHX2020_10735) - 2011083..2012357 (+) 1275 WP_014481505.1 MFS transporter -
  ZHX2020_RS10790 (ZHX2020_10740) ccpB 2013277..2013651 (-) 375 Protein_2127 transcriptional regulator CcpB -
  ZHX2020_RS10795 (ZHX2020_10745) xth 2013711..2014469 (-) 759 WP_014481508.1 exodeoxyribonuclease III -
  ZHX2020_RS10800 (ZHX2020_10750) rpsR 2014534..2014773 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  ZHX2020_RS10805 (ZHX2020_10755) ssbA 2014817..2015335 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  ZHX2020_RS10810 (ZHX2020_10760) rpsF 2015376..2015663 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  ZHX2020_RS10815 (ZHX2020_10765) ychF 2015774..2016874 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  ZHX2020_RS10820 (ZHX2020_10770) - 2017001..2019004 (-) 2004 WP_014481509.1 molybdopterin-dependent oxidoreductase -
  ZHX2020_RS10825 (ZHX2020_10775) - 2019055..2019261 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=575138 ZHX2020_RS10805 WP_003219228.1 2014817..2015335(-) (ssbA) [Bacillus sp. ZHX3]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=575138 ZHX2020_RS10805 WP_003219228.1 2014817..2015335(-) (ssbA) [Bacillus sp. ZHX3]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378