Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPG41_RS02825 Genome accession   NZ_CP094109
Coordinates   593181..593732 (+) Length   183 a.a.
NCBI ID   WP_245068287.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe072     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 588181..598732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG41_RS02810 (MPG41_02810) cysS 588361..589758 (-) 1398 WP_245068281.1 cysteine--tRNA ligase -
  MPG41_RS02815 (MPG41_02815) murJ 589759..591219 (-) 1461 WP_245068283.1 murein biosynthesis integral membrane protein MurJ -
  MPG41_RS02820 (MPG41_02820) - 591312..593156 (+) 1845 WP_245068285.1 FapA family protein -
  MPG41_RS02825 (MPG41_02825) ruvA 593181..593732 (+) 552 WP_245068287.1 Holliday junction branch migration protein RuvA Machinery gene
  MPG41_RS02830 (MPG41_02830) - 593757..596000 (+) 2244 WP_245068289.1 DUF3519 domain-containing protein -
  MPG41_RS02835 (MPG41_02835) - 595975..596493 (+) 519 WP_245068291.1 hypothetical protein -
  MPG41_RS02840 (MPG41_02840) - 597035..597760 (-) 726 WP_000646759.1 NYN domain-containing protein -
  MPG41_RS02845 (MPG41_02845) ruvC 597891..598364 (+) 474 WP_245068294.1 crossover junction endodeoxyribonuclease RuvC -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20095.68 Da        Isoelectric Point: 8.0466

>NTDB_id=575077 MPG41_RS02825 WP_245068287.1 593181..593732(+) (ruvA) [Helicobacter pylori strain Hpfe072]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPARNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLCS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=575077 MPG41_RS02825 WP_245068287.1 593181..593732(+) (ruvA) [Helicobacter pylori strain Hpfe072]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTTCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATCCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACTAGCCCTGCGCGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGTTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAGCAACTGTGCTCTTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(139-181)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

93.989

100

0.94
  ruvA Bacillus subtilis subsp. subtilis str. 168

32.836

100

0.361
  ruvA Streptococcus pneumoniae TIGR4

33.673

100

0.361
  ruvA Streptococcus pneumoniae R6

33.673

100

0.361
  ruvA Streptococcus pneumoniae D39

33.673

100

0.361