Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KNJ79_RS18770 Genome accession   NZ_CP076394
Coordinates   3964725..3965267 (+) Length   180 a.a.
NCBI ID   WP_089215842.1    Uniprot ID   A0A239HTX7
Organism   Sphingopyxis indica strain MC4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3959725..3970267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNJ79_RS18750 (KNJ79_18700) - 3960926..3961831 (+) 906 WP_089215838.1 DMT family transporter -
  KNJ79_RS18755 (KNJ79_18705) - 3961837..3962502 (+) 666 WP_317152181.1 COQ9 family protein -
  KNJ79_RS18760 (KNJ79_18710) - 3962568..3962825 (+) 258 WP_089215840.1 FeoA family protein -
  KNJ79_RS18765 (KNJ79_18715) - 3962822..3964693 (+) 1872 WP_317152182.1 ferrous iron transporter B -
  KNJ79_RS18770 (KNJ79_18720) ssb 3964725..3965267 (+) 543 WP_089215842.1 single-stranded DNA-binding protein Machinery gene
  KNJ79_RS18775 (KNJ79_18725) - 3965279..3965752 (+) 474 WP_089215843.1 MmcB family DNA repair protein -
  KNJ79_RS18780 (KNJ79_18730) - 3965957..3966586 (-) 630 WP_317152183.1 riboflavin synthase -
  KNJ79_RS18785 (KNJ79_18735) ribD 3966594..3967538 (-) 945 WP_317153952.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  KNJ79_RS18790 (KNJ79_18740) - 3967568..3968041 (-) 474 WP_245836688.1 hypothetical protein -
  KNJ79_RS18795 (KNJ79_18745) - 3968306..3968767 (-) 462 WP_317152184.1 thioesterase family protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 18644.32 Da        Isoelectric Point: 5.0006

>NTDB_id=574926 KNJ79_RS18770 WP_089215842.1 3964725..3965267(+) (ssb) [Sphingopyxis indica strain MC4]
MAGSVNKVILIGNLGADPEIKSFQNGGRIANIRIATSEQWKDRMTGERKERTEWHNVVINGDGLVGVVERYLKKGSKVYI
EGSLRTRKWQDRDGNDRYTTEVVIAGMGGNLTMLDGAPGGGGSRGGSDWNQGGGSSGGWDQGGASGGSSGGGGWNQGGGG
SGGGGGRPPFDDDLDDDVPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=574926 KNJ79_RS18770 WP_089215842.1 3964725..3965267(+) (ssb) [Sphingopyxis indica strain MC4]
ATGGCTGGCAGCGTCAACAAGGTTATTCTCATCGGCAATCTGGGCGCCGACCCCGAAATCAAGTCGTTCCAGAACGGCGG
CCGCATCGCCAATATCCGCATCGCGACGTCCGAGCAGTGGAAGGACCGGATGACCGGCGAGCGCAAGGAGCGCACCGAAT
GGCATAATGTCGTGATCAACGGCGACGGGCTGGTCGGCGTCGTCGAGCGCTATCTGAAGAAGGGCTCGAAGGTCTATATC
GAAGGGAGTCTCCGCACCCGCAAATGGCAGGACCGCGACGGCAACGACCGCTATACGACCGAAGTGGTGATCGCGGGCAT
GGGCGGCAATCTGACCATGCTCGACGGCGCGCCGGGCGGCGGCGGATCGCGCGGCGGCAGCGACTGGAACCAGGGCGGCG
GATCGTCGGGCGGCTGGGATCAGGGCGGCGCTTCGGGCGGAAGCTCGGGCGGCGGTGGCTGGAACCAGGGCGGCGGCGGA
AGCGGCGGCGGTGGCGGCCGCCCCCCGTTCGACGACGATCTGGACGACGACGTCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A239HTX7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.333

100

0.483
  ssb Glaesserella parasuis strain SC1401

45.989

100

0.478
  ssb Neisseria meningitidis MC58

36.813

100

0.372
  ssb Neisseria gonorrhoeae MS11

36.813

100

0.372