Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPF96_RS02835 Genome accession   NZ_CP094101
Coordinates   588964..589515 (+) Length   183 a.a.
NCBI ID   WP_245049621.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe079     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 583964..594515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF96_RS02820 (MPF96_02820) cysS 584144..585541 (-) 1398 WP_245049615.1 cysteine--tRNA ligase -
  MPF96_RS02825 (MPF96_02825) murJ 585542..587002 (-) 1461 WP_245049617.1 murein biosynthesis integral membrane protein MurJ -
  MPF96_RS02830 (MPF96_02830) - 587095..588939 (+) 1845 WP_245049619.1 FapA family protein -
  MPF96_RS02835 (MPF96_02835) ruvA 588964..589515 (+) 552 WP_245049621.1 Holliday junction branch migration protein RuvA Machinery gene
  MPF96_RS02840 (MPF96_02840) - 589844..590437 (+) 594 Protein_542 DUF3519 domain-containing protein -
  MPF96_RS02845 (MPF96_02845) - 590589..590834 (+) 246 WP_245049623.1 hypothetical protein -
  MPF96_RS02850 (MPF96_02850) - 591090..591815 (-) 726 WP_000646751.1 NYN domain-containing protein -
  MPF96_RS02855 (MPF96_02855) ruvC 591946..592419 (+) 474 WP_001221166.1 crossover junction endodeoxyribonuclease RuvC -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20197.82 Da        Isoelectric Point: 8.0466

>NTDB_id=574871 MPF96_RS02835 WP_245049621.1 588964..589515(+) (ruvA) [Helicobacter pylori strain Hpfe079]
MIVGLIGVVEKISALEVHIEVQGVIYGVQVSMRTSASLQVGQKVRLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPTCNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=574871 MPF96_RS02835 WP_245049621.1 588964..589515(+) (ruvA) [Helicobacter pylori strain Hpfe079]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGTGCATATAGAAGTGCAAGGGGTTATTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTCGCTCCAAGTGGGCCAAAAAGTGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAAAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCTATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAACTAGCCCTACGTGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAGCAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(141-181)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

91.803

100

0.918
  ruvA Bacillus subtilis subsp. subtilis str. 168

33.333

100

0.366
  ruvA Streptococcus pneumoniae TIGR4

33.846

100

0.361
  ruvA Streptococcus pneumoniae R6

33.846

100

0.361
  ruvA Streptococcus pneumoniae D39

33.846

100

0.361