Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPG36_RS02835 Genome accession   NZ_CP094099
Coordinates   591395..591946 (+) Length   183 a.a.
NCBI ID   WP_245017316.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe080     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 586395..596946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG36_RS02820 (MPG36_02820) cysS 586574..587971 (-) 1398 WP_245017313.1 cysteine--tRNA ligase -
  MPG36_RS02825 (MPG36_02825) murJ 587972..589432 (-) 1461 WP_245017314.1 murein biosynthesis integral membrane protein MurJ -
  MPG36_RS02830 (MPG36_02830) - 589525..591369 (+) 1845 WP_245017315.1 FapA family protein -
  MPG36_RS02835 (MPG36_02835) ruvA 591395..591946 (+) 552 WP_245017316.1 Holliday junction branch migration protein RuvA Machinery gene
  MPG36_RS02840 (MPG36_02840) - 592055..592606 (+) 552 Protein_539 PBECR2 nuclease fold domain-containing protein -
  MPG36_RS02845 (MPG36_02845) - 592699..593064 (+) 366 WP_245017317.1 hypothetical protein -
  MPG36_RS02850 (MPG36_02850) - 593096..594232 (-) 1137 WP_245017318.1 NAD-binding protein -
  MPG36_RS02855 (MPG36_02855) rpmB 594382..594570 (-) 189 WP_001119000.1 50S ribosomal protein L28 -
  MPG36_RS02860 (MPG36_02860) - 594670..595512 (-) 843 WP_245017319.1 HpaA family protein -
  MPG36_RS02865 (MPG36_02865) mraY 595639..596700 (+) 1062 WP_245017320.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20117.76 Da        Isoelectric Point: 9.9594

>NTDB_id=574833 MPG36_RS02835 WP_245017316.1 591395..591946(+) (ruvA) [Helicobacter pylori strain Hpfe080]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETGPARNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKKALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=574833 MPG36_RS02835 WP_245017316.1 591395..591946(+) (ruvA) [Helicobacter pylori strain Hpfe080]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTAATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACTGGCCCTGCACGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAGGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAAAAGCCTTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(139-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

93.989

100

0.94
  ruvA Streptococcus pneumoniae R6

34.359

100

0.366
  ruvA Streptococcus pneumoniae D39

34.359

100

0.366
  ruvA Bacillus subtilis subsp. subtilis str. 168

33.333

100

0.366
  ruvA Streptococcus pneumoniae TIGR4

33.846

100

0.361