Detailed information NTG0574809

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KN217_RS04245
• Genome accession: NZ_CP076348
• Coordinates: 876748..877617 (+)
• Length: 289 a.a.
• NCBI ID: WP_301619908.1
• Uniprot ID: -
• Organism: Stutzerimonas stutzeri strain DN36
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 871748..882617

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KN217_RS04230 (KN217_04215)	-	873061..873501 (-)	441	WP_301619907.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
KN217_RS04235 (KN217_04220)	pilB	873822..875525 (+)	1704	WP_213662718.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KN217_RS04240 (KN217_04225)	pilC	875527..876744 (+)	1218	WP_213662719.1	type II secretion system F family protein	Machinery gene
KN217_RS04245 (KN217_04230)	pilD	876748..877617 (+)	870	WP_301619908.1	A24 family peptidase	Machinery gene
KN217_RS04250 (KN217_04235)	coaE	877722..878324 (+)	603	WP_301619909.1	dephospho-CoA kinase	-
KN217_RS04255 (KN217_04240)	yacG	878324..878521 (+)	198	WP_301619910.1	DNA gyrase inhibitor YacG	-
KN217_RS04260 (KN217_04245)	-	878568..879251 (-)	684	WP_155551575.1	energy-coupling factor ABC transporter permease	-
KN217_RS04265 (KN217_04250)	rplM	879666..880094 (+)	429	WP_009867981.1	50S ribosomal protein L13	-
KN217_RS04270 (KN217_04255)	rpsI	880109..880501 (+)	393	WP_009867980.1	30S ribosomal protein S9	-
KN217_RS04275 (KN217_04260)	petA	880751..881344 (+)	594	WP_009867979.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-
KN217_RS04280 (KN217_04265)	-	881344..882555 (+)	1212	WP_102827572.1	cytochrome bc complex cytochrome b subunit	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31846.00 Da
• Isoelectric Point: 8.2427

>NTDB_id=574809 KN217_RS04245 WP_301619908.1 876748..877617(+) (pilD) [Stutzerimonas stutzeri strain DN36]
MMLFEFLASHALAFVLCAGLLGLLVGSFLNVVIYRLPIMMQREWQAQAREFLELPPESAGAAFNLFLPPSRCPHCAHAIR
SWENIPLLSWMALRGRCSSCKKPIPARYPLVELACGLLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDIDHQLLPDSLV
LPLLWLGLIVNSGGFFVSPVDALWGAIAGYLSLWTVYWLFKLVTGKEGMGYGDFKLLAMIGAWGGWQVLPLTILLSSLVG
AVLGSILLRIRRAAQGTPIPFGPYLAIAGWIALLWGDSITRGYLQFAHM

Nucleotide

• Length: 870 bp

>NTDB_id=574809 KN217_RS04245 WP_301619908.1 876748..877617(+) (pilD) [Stutzerimonas stutzeri strain DN36]
ATGATGCTGTTTGAGTTCCTGGCCAGCCATGCGCTGGCCTTTGTTTTGTGTGCGGGGCTGCTCGGCCTGTTAGTCGGCAG
TTTTCTAAATGTAGTCATCTATCGTCTGCCGATCATGATGCAGCGCGAGTGGCAGGCGCAGGCGCGGGAGTTTCTGGAGC
TGCCGCCCGAATCGGCTGGGGCGGCGTTCAACCTGTTCCTGCCGCCTTCGCGATGCCCGCATTGCGCGCATGCGATTCGG
TCGTGGGAAAACATTCCGTTACTGAGCTGGATGGCGCTGCGGGGCAGATGCTCGTCTTGCAAGAAGCCTATCCCTGCTCG
TTATCCGCTGGTTGAGCTTGCTTGCGGGCTTCTCTCGGGTTACGTGGCTTGGCACTTTGGCTTTACTTGGCAGGCAGGCG
CCATGCTGTTGCTGACCTGGGGGCTGCTGGCGATGAGCCTGATCGATATCGATCATCAACTGTTGCCGGATTCGCTGGTG
CTGCCGCTGCTTTGGTTGGGTCTGATCGTTAATAGTGGTGGCTTTTTTGTCTCGCCGGTAGACGCCCTGTGGGGAGCGAT
CGCCGGGTACCTGAGTCTGTGGACGGTTTACTGGCTGTTCAAGCTGGTTACCGGCAAGGAGGGCATGGGTTACGGCGACT
TCAAACTGCTTGCGATGATCGGCGCTTGGGGCGGTTGGCAAGTGTTGCCGCTCACCATTCTGTTGTCCTCGCTGGTAGGG
GCAGTGCTTGGCAGCATCCTGCTGCGCATACGCCGTGCTGCGCAGGGCACGCCGATTCCTTTCGGGCCTTATCTGGCCAT
TGCTGGGTGGATCGCGTTGTTGTGGGGCGATTCCATTACTCGTGGCTATCTGCAGTTCGCGCATATGTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	57.706	96.54	0.557
pilD	Vibrio campbellii strain DS40M4	52.727	95.156	0.502
pilD	Acinetobacter nosocomialis M2	49.825	98.616	0.491
pilD	Acinetobacter baumannii D1279779	49.474	98.616	0.488
pilD	Neisseria gonorrhoeae MS11	50.376	92.042	0.464