Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KN217_RS02910 Genome accession   NZ_CP076348
Coordinates   614867..615361 (+) Length   164 a.a.
NCBI ID   WP_008570591.1    Uniprot ID   A0A8E2QGS8
Organism   Stutzerimonas stutzeri strain DN36     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 609867..620361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KN217_RS02900 (KN217_02890) uvrA 610350..613193 (-) 2844 WP_301619775.1 excinuclease ABC subunit UvrA -
  KN217_RS02905 (KN217_02895) - 613324..614691 (+) 1368 WP_301619776.1 MFS transporter -
  KN217_RS02910 (KN217_02900) ssb 614867..615361 (+) 495 WP_008570591.1 single-stranded DNA-binding protein Machinery gene
  KN217_RS02915 (KN217_02905) - 615372..616256 (+) 885 WP_237264324.1 sugar nucleotide-binding protein -
  KN217_RS02920 (KN217_02910) - 616249..617178 (+) 930 WP_301619777.1 NAD-dependent epimerase/dehydratase family protein -
  KN217_RS02925 (KN217_02915) - 617248..617910 (-) 663 WP_301619778.1 OmpW family outer membrane protein -
  KN217_RS02930 (KN217_02920) - 618093..618872 (+) 780 WP_213662583.1 DUF3450 domain-containing protein -
  KN217_RS02935 (KN217_02925) - 618869..620215 (+) 1347 WP_301619779.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18339.38 Da        Isoelectric Point: 5.9492

>NTDB_id=574806 KN217_RS02910 WP_008570591.1 614867..615361(+) (ssb) [Stutzerimonas stutzeri strain DN36]
MARGVNKVILIGNVGGDPETRYLPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEVVVDMNGSMQLLGGRGGSSDDAPRQPRPQREPQQQAPRAQAQPQQRPAAQQPAPDYDSFDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=574806 KN217_RS02910 WP_008570591.1 614867..615361(+) (ssb) [Stutzerimonas stutzeri strain DN36]
ATGGCCAGAGGGGTGAATAAAGTCATCTTGATCGGCAATGTCGGCGGTGATCCGGAAACCCGCTACCTGCCCAACGGCAA
TGCGGTAACCAACATTACCCTGGCCACCACCGACAGCTGGAAGGACAAGCAGACCGGTCAGCTGCAGGAGCGTACCGAGT
GGCATCGCGTCGTGCTGTTCGGCAAGGTTGCCGAGATTGCCGGCGAGTACCTGCGCAAGGGCTCGCAATGCTACATCGAG
GGCCGCCTGCAGACCCGCGAGTGGGAAAAGGATGGCGTCAAGCGCTACACCACCGAGGTTGTGGTCGACATGAACGGCAG
CATGCAGCTGCTTGGCGGTCGCGGCGGTAGTTCCGACGACGCGCCGCGTCAGCCGCGCCCGCAGCGTGAGCCGCAGCAGC
AGGCGCCACGCGCCCAGGCTCAGCCGCAGCAACGTCCGGCCGCGCAACAGCCGGCACCGGACTACGACAGCTTCGACGAC
GATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.627

100

0.622
  ssb Glaesserella parasuis strain SC1401

45.81

100

0.5
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.488
  ssb Neisseria meningitidis MC58

44.886

100

0.482