Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KM843_RS19195 Genome accession   NZ_CP076291
Coordinates   3899863..3900381 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain US1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3899863..3909633 3899863..3900381 within 0


Gene organization within MGE regions


Location: 3899863..3909633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM843_RS19195 (KM843_19195) ssbA 3899863..3900381 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  KM843_RS19200 (KM843_19200) rpsF 3900421..3900708 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  KM843_RS19205 (KM843_19205) ychF 3900820..3901920 (-) 1101 WP_012118940.1 redox-regulated ATPase YchF -
  KM843_RS19210 (KM843_19210) - 3902046..3904049 (-) 2004 WP_012118941.1 molybdopterin-dependent oxidoreductase -
  KM843_RS19215 (KM843_19215) - 3904096..3904302 (-) 207 WP_012118942.1 DUF951 domain-containing protein -
  KM843_RS19220 (KM843_19220) - 3904388..3905413 (-) 1026 WP_088005468.1 hypothetical protein -
  KM843_RS19225 (KM843_19225) - 3905515..3906060 (+) 546 WP_225367685.1 GNAT family N-acetyltransferase -
  KM843_RS19230 (KM843_19230) yyaC 3906235..3906849 (+) 615 WP_004392969.1 spore protease YyaC -
  KM843_RS19235 (KM843_19235) - 3906878..3907729 (-) 852 WP_012118944.1 ParB/RepB/Spo0J family partition protein -
  KM843_RS19240 (KM843_19240) soj 3907722..3908483 (-) 762 WP_007409899.1 sporulation initiation inhibitor protein Soj -
  KM843_RS19245 (KM843_19245) noc 3908782..3909633 (-) 852 WP_007409900.1 nucleoid occlusion protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=574578 KM843_RS19195 WP_004392979.1 3899863..3900381(-) (ssbA) [Bacillus velezensis strain US1]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=574578 KM843_RS19195 WP_004392979.1 3899863..3900381(-) (ssbA) [Bacillus velezensis strain US1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378