Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPF86_RS02845 Genome accession   NZ_CP094091
Coordinates   591407..591958 (+) Length   183 a.a.
NCBI ID   WP_245065066.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe088     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 586407..596958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF86_RS02830 (MPF86_02830) cysS 586587..587984 (-) 1398 WP_245065063.1 cysteine--tRNA ligase -
  MPF86_RS02835 (MPF86_02835) murJ 587985..589445 (-) 1461 WP_245065064.1 murein biosynthesis integral membrane protein MurJ -
  MPF86_RS02840 (MPF86_02840) - 589538..591382 (+) 1845 WP_245065065.1 FapA family protein -
  MPF86_RS02845 (MPF86_02845) ruvA 591407..591958 (+) 552 WP_245065066.1 Holliday junction branch migration protein RuvA Machinery gene
  MPF86_RS02855 (MPF86_02855) - 592286..594829 (+) 2544 Protein_543 DUF3519 domain-containing protein -
  MPF86_RS02860 (MPF86_02860) - 595365..596096 (-) 732 WP_245065068.1 NYN domain-containing protein -
  MPF86_RS02865 (MPF86_02865) ruvC 596227..596700 (+) 474 WP_021303078.1 crossover junction endodeoxyribonuclease RuvC -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20187.72 Da        Isoelectric Point: 7.4030

>NTDB_id=574552 MPF86_RS02845 WP_245065066.1 591407..591958(+) (ruvA) [Helicobacter pylori strain Hpfe088]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQEGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPAHNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=574552 MPF86_RS02845 WP_245065066.1 591407..591958(+) (ruvA) [Helicobacter pylori strain Hpfe088]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTTCAAGAGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACTAGTCCTGCGCACAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAGCAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(139-181)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

93.443

100

0.934
  ruvA Bacillus subtilis subsp. subtilis str. 168

33.333

100

0.366
  ruvA Streptococcus pneumoniae TIGR4

33.846

100

0.361
  ruvA Streptococcus pneumoniae R6

33.846

100

0.361
  ruvA Streptococcus pneumoniae D39

33.846

100

0.361