Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KM146_RS19495 Genome accession   NZ_CP076287
Coordinates   2498516..2499055 (-) Length   179 a.a.
NCBI ID   WP_005381235.1    Uniprot ID   A0AAW9BS04
Organism   Vibrio alginolyticus strain ZJ-0     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2493516..2504055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM146_RS19475 (KM146_19470) - 2493835..2494167 (-) 333 WP_065274907.1 MSHA biogenesis protein MshK -
  KM146_RS19480 (KM146_19475) gspM 2494160..2494810 (-) 651 WP_005381197.1 type II secretion system protein GspM -
  KM146_RS19485 (KM146_19480) - 2494807..2496252 (-) 1446 WP_065274908.1 MSHA biogenesis protein MshI -
  KM146_RS19490 (KM146_19485) csrD 2496264..2498273 (-) 2010 WP_005381201.1 RNase E specificity factor CsrD -
  KM146_RS19495 (KM146_19490) ssb 2498516..2499055 (-) 540 WP_005381235.1 single-stranded DNA-binding protein Machinery gene
  KM146_RS19500 (KM146_19495) qstR 2499333..2499977 (+) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  KM146_RS19505 (KM146_19500) galU 2500137..2501009 (+) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  KM146_RS19510 (KM146_19505) uvrA 2501159..2503981 (+) 2823 WP_005381241.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19892.93 Da        Isoelectric Point: 4.9164

>NTDB_id=574415 KM146_RS19495 WP_005381235.1 2498516..2499055(-) (ssb) [Vibrio alginolyticus strain ZJ-0]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QSQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=574415 KM146_RS19495 WP_005381235.1 2498516..2499055(-) (ssb) [Vibrio alginolyticus strain ZJ-0]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGCCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCAATGGGCGGTCAACAGCAGCAACAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAATCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.328

100

0.821
  ssb Glaesserella parasuis strain SC1401

54.922

100

0.592
  ssb Neisseria meningitidis MC58

46.328

98.883

0.458
  ssb Neisseria gonorrhoeae MS11

46.328

98.883

0.458