Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A7A15_RS21965 Genome accession   NZ_CP076282
Coordinates   4502617..4503153 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain 442/2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4497617..4508153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A15_RS21945 (A7A15_21850) aphA 4497906..4498619 (+) 714 WP_001307512.1 acid phosphatase AphA -
  A7A15_RS21950 (A7A15_21855) yjbQ 4498730..4499146 (+) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  A7A15_RS21955 (A7A15_21860) yjbR 4499150..4499506 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  A7A15_RS21960 (A7A15_21865) uvrA 4499541..4502363 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  A7A15_RS21965 (A7A15_21870) ssb 4502617..4503153 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  A7A15_RS21970 (A7A15_21875) yjcB 4503252..4503533 (-) 282 WP_001295689.1 YjcB family protein -
  A7A15_RS21975 (A7A15_21880) pdeC 4503963..4505549 (+) 1587 WP_000019535.1 c-di-GMP phosphodiesterase PdeC -
  A7A15_RS21980 (A7A15_21885) soxS 4505552..4505875 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  A7A15_RS21985 (A7A15_21890) soxR 4505961..4506425 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=574362 A7A15_RS21965 WP_000168305.1 4502617..4503153(+) (ssb) [Escherichia coli strain 442/2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=574362 A7A15_RS21965 WP_000168305.1 4502617..4503153(+) (ssb) [Escherichia coli strain 442/2]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489